| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,209,220 – 9,209,338 |
| Length | 118 |
| Max. P | 0.591854 |
| Location | 9,209,220 – 9,209,338 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 77.94 |
| Shannon entropy | 0.37607 |
| G+C content | 0.50531 |
| Mean single sequence MFE | -35.20 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.76 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9209220 118 - 21146708 GUUGAUUCGCUGUUGGCCAACUUUGGCACAGCCAAACGGCAAACUUU-AAAGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACA-AAGGGGGC-UACAAAGGGGGUUUACAAAAAGGGUG ((.(((((.((..(((((..(((((....((((...((((((((((.-....)))))))))).((((....)))).))))...))-)))..)))-))...)).))))).)).......... ( -41.00, z-score = -3.32, R) >droSec1.super_1 6732250 118 - 14215200 GUUGAUUCGCUGUUGGCCAACUUCGGCACAGCCAAACGGCAAACUUU-AAAGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACA-AAAGGGGC-UACAAAGGGGGUUUACAAAGGGGGUG ((.(((((.((..(((((((((((((((.((((...((((((((((.-....))))))))))..))))..))))))))))...(.-...).)))-))...)).))))).)).......... ( -39.20, z-score = -2.64, R) >droYak2.chr2R 13388942 104 + 21139217 GUUGAUUCGCUGUUGGCCAACUUCGGCGCAGCCAAACGGCCAACUUU-AAAGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACA-AAGGGGGCUUACAAAAGGGG--------------- ((((((..((((((((((......(((...)))....)))))))...-.....)))..))))))..(((((((..(((((((...-...))))))))))))))...--------------- ( -29.20, z-score = 0.30, R) >droEre2.scaffold_4845 5983253 103 + 22589142 GUUGAUUCGCUGUUGGCCAACUUGGGCACAGCCGCACGGCAAACUUU-AAAGGGGUUUUC---CCCCUUUUGUUGGCGUUUUACA-AAGGGGGCUUACAAAAGGGGCG------------- ........(((((.(.((.....)).))))))(((..((.((((((.-....)))))).)---)(((((((((.(((.((((...-.)))).))).))))))))))))------------- ( -37.50, z-score = -1.43, R) >droAna3.scaffold_13266 16517984 100 - 19884421 GUUGAUUCGCUGUUGGCCAACUUUGGCAGAGCCAAACGGCAAACUUUAAAAGGGGUUUGUUGAAGGCUUUUGUUGGGAUUCCAAGUGAGGGGGGGGAUGC--------------------- ....((((.((.((.((((....))))((((((...(((((((((((....)))))))))))..))))))..((((....))))....)).)).))))..--------------------- ( -29.10, z-score = -0.50, R) >consensus GUUGAUUCGCUGUUGGCCAACUUCGGCACAGCCAAACGGCAAACUUU_AAAGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACA_AAGGGGGC_UACAAAAGGGG_______________ ........(((((..(((......))))))))....((((((((((......))))))))))....(((((((....(((((.......)))))..))))))).................. (-22.00 = -22.76 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:45 2011