| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,203,689 – 9,203,785 |
| Length | 96 |
| Max. P | 0.849830 |
| Location | 9,203,689 – 9,203,785 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.23 |
| Shannon entropy | 0.47278 |
| G+C content | 0.53749 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -19.11 |
| Energy contribution | -19.83 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9203689 96 + 21146708 ----------------UUUGUACGUGUGUGAGUGUGUGCU-UAUGAGUUCGGCGCGAGUGUGUGGGUUCUGCGGGAAAACUCACUCAUAACGCGCUCGGUGCUCAUUGCAUUG ----------------...(((((..(....)..))))).-.((((((((((((((.(((.((((((((.....))..)))))).)))..))))).))).))))))....... ( -32.80, z-score = -1.18, R) >droSim1.chr2R_random 2284778 96 + 2996586 ----------------UGUGUACGUGUGUGAGUGUGUGCU-UAUGAGUUCGGCGCGAGUGUGUGGGUUCUGCGGGGAAACUCACUCAUAACGCGCUCGGUGCUCAUUGCAUUG ----------------((((((((..(....)..))))).-.((((((((((((((.(((.(((((((((....)).))))))).)))..))))).))).)))))).)))... ( -34.80, z-score = -1.35, R) >droSec1.super_1 6726654 96 + 14215200 ----------------UGUGUACGUGUGCGAGUGUGUGCU-UAUGAGUUCGGCGCGAGUGUGUGGGUUCUGCGGGGAAACUCACUCAUAACGCGCUCGGUGCUCAUUGCAUUG ----------------.(((((.(((.(((.(.(((((.(-(((((((((.((((....)))).))......(((....)))))))))))))))).)..))).)))))))).. ( -35.00, z-score = -0.99, R) >droYak2.chr2R 13383275 96 - 21139217 ----------------UGUGCCAGUGUGUGAGUGUGUGCU-UAUGAGUUCGGCGCGAGUGUGUGGGUUCUGCGGGGAAACUCACUCAUAACGCGCUCGGUGCUCAUUGCAUUG ----------------.....((((((((((((....)))-)))((((((((((((.(((.(((((((((....)).))))))).)))..))))).))).))))...)))))) ( -36.00, z-score = -1.33, R) >droEre2.scaffold_4845 5977763 85 - 22589142 ----------------CGUGCGAGUGUGUGAGUGUGUGCU-UAUGAGU-----------GUGCGGGUUCUGCGGGGAAACUCACUCAUAACGCGCUCGGUGCUCAUUGCAUUG ----------------.(((((((..(.(((((((((...-(((((((-----------..((((...))))(((....))))))))))))))))))))..)))...)))).. ( -35.40, z-score = -2.91, R) >droAna3.scaffold_13266 16511636 105 + 19884421 CUUGCCAGUGUGGGUGCGGCUGUGCUUAUGAGUUCUUGCUCUGCAAGU---GUGUAAGUGCGUGGGAUUCACGGGGAAACUCACUCAUAACGCGCUCGGUGCUCAUUG----- .........(((((..(.(..((((((((((((....((.(((((...---.))).)).))(((.....)))(((....))))))))))).)))).).)..)))))..----- ( -35.60, z-score = -0.68, R) >droWil1.scaffold_181009 2057640 74 + 3585778 --------------------UAUGGGUAUGUGUGUGAGUG-UGUUGGU-----------GUGUGAGAU-UGUGGGCAA-CUCACUCAUAACGCGCUUGGCGCUCAUUG----- --------------------.......(((.(((((((((-(((((.(-----------(.(((((.(-((....)))-))))).)))))))))))).)))).)))..----- ( -27.70, z-score = -2.77, R) >consensus ________________UGUGUACGUGUGUGAGUGUGUGCU_UAUGAGUUCGGCGCGAGUGUGUGGGUUCUGCGGGGAAACUCACUCAUAACGCGCUCGGUGCUCAUUGCAUUG ............................(((((((((....(((((((.............((((...))))(((....)))))))))))))))))))((((.....)))).. (-19.11 = -19.83 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:44 2011