| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,197,748 – 9,197,848 |
| Length | 100 |
| Max. P | 0.573905 |
| Location | 9,197,748 – 9,197,848 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.18 |
| Shannon entropy | 0.18162 |
| G+C content | 0.64428 |
| Mean single sequence MFE | -40.20 |
| Consensus MFE | -35.60 |
| Energy contribution | -35.88 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573905 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 9197748 100 - 21146708 AGCACUACGGAGCACUACGGCCGGGGGCGAUGGCUCCCGGGCAUGCCAUCGUUGCACGGCAAUCGGAAUCAUCCGAAGCAGGAGCGGGGCAUCAUCCGAA .......((((.......(.((((((((....)))))))).)(((((.(((((.(...((..(((((....))))).)).).))))))))))..)))).. ( -45.00, z-score = -2.58, R) >droSim1.chr2R 7657800 99 - 19596830 AGUACUACGGAGCA-AAAGGCUGGGGGCGAUGGCUCCCGGGCAUGCCAUCGUUGCACGGCAAUCGGAAUCAUCCGGAGCAGGAGCCGGGCAUCAUCCGAA .......((((...-...(.((((((((....)))))))).)(((((...(((((...)))))(((.....(((......))).))))))))..)))).. ( -38.80, z-score = -0.98, R) >droSec1.super_1 6720786 100 - 14215200 AGCACUACGGAGCACUACGGCCGGGGGCGAUGGCUCCCGGGCAUGCCAUCGUUGCACGGCAAUCGGAAUCAUCCGGCGCAGGAGCCGGGCAUCAUCCGAA .((.(....).))......(((((.(((((((((..........))))))))).).))))..(((((....((((((......)))))).....))))). ( -45.60, z-score = -1.97, R) >droYak2.chr2R 13377220 98 + 21139217 CAACCUACGGAGCACUACGGCCGGGGGCGAUGGCUCCCGGGCAUGCCAUCGUUGCACGGCCAUCGGAAUCAUCCGGAGCAGGAGC--GGCAUCAUCCGAA .......((((((.....((((((.(((((((((..........))))))))).).))))).(((((....))))).))..((..--....)).)))).. ( -41.10, z-score = -1.36, R) >droEre2.scaffold_4845 5972114 92 + 22589142 -----UAAGGAGCACUACGG-CGAGGGCGAUGGCUCCCGGGCAUGCCAUCGUUGCACGGCCAUCGGCAUCAUCCGGAGCAGGAGC--GGCAUCAUCCGAG -----...(((......(((-((...((((((((..........))))))))))).))(((.((((......)))).((....))--)))....)))... ( -30.50, z-score = 0.89, R) >consensus AGCACUACGGAGCACUACGGCCGGGGGCGAUGGCUCCCGGGCAUGCCAUCGUUGCACGGCAAUCGGAAUCAUCCGGAGCAGGAGC_GGGCAUCAUCCGAA .......((((.......(.((((((((....)))))))).)(((((...(((.(...((..((((......)))).)).).)))..)))))..)))).. (-35.60 = -35.88 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:43 2011