| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,196,523 – 9,196,591 |
| Length | 68 |
| Max. P | 0.757526 |
| Location | 9,196,523 – 9,196,591 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 87.96 |
| Shannon entropy | 0.25328 |
| G+C content | 0.37128 |
| Mean single sequence MFE | -14.68 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9196523 68 + 21146708 CAGGGAAAACGCCGUGGAAAACAAACAGAAAUGCGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCC ..........((((((((((((((.((....)).(((..........)))...)))))))))))))). ( -17.30, z-score = -2.36, R) >droSim1.chr2R 7656559 68 + 19596830 CAGGGAAAACGCCGUGGAAAACAAACAGAAAUGCGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCC ..........((((((((((((((.((....)).(((..........)))...)))))))))))))). ( -17.30, z-score = -2.36, R) >droSec1.super_1 6719539 68 + 14215200 CAGGGAAAACGCCGUGGAAAACAAACAGAAAUGCGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCC ..........((((((((((((((.((....)).(((..........)))...)))))))))))))). ( -17.30, z-score = -2.36, R) >droYak2.chr2R 13376085 68 - 21139217 CAGGGAAAACGCCGUGGAAAACAAACAGAAAUGCGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCC ..........((((((((((((((.((....)).(((..........)))...)))))))))))))). ( -17.30, z-score = -2.36, R) >droEre2.scaffold_4845 5970984 68 - 22589142 CAGGGAAAACGCCGUGGAAAACAAACAGAAAUGCGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCC ..........((((((((((((((.((....)).(((..........)))...)))))))))))))). ( -17.30, z-score = -2.36, R) >droAna3.scaffold_13266 16504350 66 + 19884421 CCCUCAGAAC-CCGGGGAAAACAAACA-AAAUGUGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCU ((((......-..)))).....(((((-(.((((..(((....)))..)))).))))))......... ( -9.90, z-score = 0.50, R) >droWil1.scaffold_181009 2047484 68 + 3585778 CAAAUAGGGUACCAAAAAACGGAACAAAAAAUGCGUGGAAAAUUUAUGACAUCUUUUUUUUUAUGGCC .......(((.((.......))...........(((((((((..............)))))))))))) ( -6.34, z-score = 1.15, R) >consensus CAGGGAAAACGCCGUGGAAAACAAACAGAAAUGCGUUGAAAAUUUAUGACAUCUUGUUUUUUAUGGCC ..........((((((((((((((......(((.((.....)).)))......)))))))))))))). (-12.34 = -12.33 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:41 2011