| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,193,504 – 9,193,617 |
| Length | 113 |
| Max. P | 0.569221 |
| Location | 9,193,504 – 9,193,617 |
|---|---|
| Length | 113 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.43 |
| Shannon entropy | 0.46015 |
| G+C content | 0.33665 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -13.74 |
| Energy contribution | -13.73 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569221 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 9193504 113 + 21146708 AAACGAGCGAGUCG-----CGCUGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCACGGUGCUCUUCUGAAGACAG ....(((((.((((-----(((((....((((((((((((....))))))))))))...))))........((((.......)))).......))).))..)))))............ ( -27.50, z-score = -0.99, R) >droSim1.chr2R 7653544 113 + 19596830 AAACAAGCGAGUCG-----CGCUGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCACGGUGCUCUACUGAAGAAAG .(((.((((.....-----))))..)))((((((((((((....))))))))))))((((.((((((.((.((((.......))))..)).)))))).(((((...)))))..)))). ( -25.10, z-score = -0.65, R) >droSec1.super_1 6716552 113 + 14215200 AAACAAGCGAGUCG-----CGCUGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCACGGUGCUCUUCUGAAGAAAG ........(((..(-----(((((.(..((((((((((((....))))))))))))...).((((((.((.((((.......))))..)).)))))).))))))..)))......... ( -25.60, z-score = -0.73, R) >droYak2.chr2R 13373053 113 - 21139217 AAACAAGCGAGUCG-----CGCUGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCACGGUGCUCUCCUGAAGAAAG .....((.(((..(-----(((((.(..((((((((((((....))))))))))))...).((((((.((.((((.......))))..)).)))))).)))))).)))))........ ( -27.80, z-score = -1.63, R) >droEre2.scaffold_4845 5967988 112 - 22589142 AAACA-GCGAGUCG-----CGCAGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCUGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCACGGUGCUCUUCUGAAGAAAG ...((-(.(((...-----.(((.(((.((((((((((((....)))))))))))).....((((((.((.((((.......))))..)).))))))))).))).))))))....... ( -26.20, z-score = -0.92, R) >droAna3.scaffold_13266 16501449 113 + 19884421 AAAUGAGUGAGUCG-----AGGAACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCAAUAUUGUGCACUGUGUUCUCCUGGAGAAAG ...........((.-----((((..(..((((((((((((....))))))))))))...).((((((.(((((((.......)))).))).)))))).........)))).))..... ( -25.40, z-score = -1.55, R) >dp4.chr3 19056940 118 - 19779522 AAAUGAGCGAAGAACGGAGAGCAACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGCGCAUAAGACUCUCUUGGAGACAG ..(((.((((((((((........))))((((((((((((....)))))))))))))))).((...(((((((....))))))).))......)).)))..........((....)). ( -23.90, z-score = -1.04, R) >droPer1.super_2 8144915 118 - 9036312 AAAUGAGCGAAGAACGGAGAGCAACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCAUAAGACUCUCUUGGAGACAG ...............(((((((...(..((((((((((((....))))))))))))...).((((((((((((....))))))........))))))....).))))))((....)). ( -24.30, z-score = -1.20, R) >droWil1.scaffold_181009 2044661 103 + 3585778 ----AAGCAAAAAU----GAGCAGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCAGCUACGUUUUGCC------- ----..((((((..----.(((.(((..((((((((((((....))))))))))))...).((...(((((((....))))))).))........)).)))...)))))).------- ( -26.00, z-score = -2.36, R) >droMoj3.scaffold_6496 5217878 88 + 26866924 ---------AAAUG----AGCGCCGGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUUAGCAUUAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGUGUGC----------------- ---------..(((----.((((..(..((((((((((((....))))))))))))..)..))..((((((((....)))))))))))))...........----------------- ( -20.40, z-score = -2.24, R) >droGri2.scaffold_15245 10689887 97 + 18325388 AAAUGAGCGAACUG----UGCGAAGGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUUAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGUGUGC----------------- ..(((.((.....(----(((...((..((((((((((((....))))))))))))..)).))))((((((((....)))))))))))))...........----------------- ( -20.70, z-score = -1.36, R) >consensus AAACAAGCGAGUCG_____CGCAGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCACGGUGCUCUCCUGAAGAAAG ......(((...................((((((((((((....))))))))))))(((((.((........)).)))))..............)))..................... (-13.74 = -13.73 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:40 2011