| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,723,544 – 2,723,637 |
| Length | 93 |
| Max. P | 0.531291 |
| Location | 2,723,544 – 2,723,637 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 74.70 |
| Shannon entropy | 0.49231 |
| G+C content | 0.47973 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -13.12 |
| Energy contribution | -14.57 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2723544 93 - 23011544 CAUCAUCAUCAUUGGCAUCUCGACAUCACCAUUUUGGGGCCUCGGGUGCGCGGUAAUCCAAGGAUGAUGAUACUCCCCUAAACUCCUCAAACU .(((((((((....(((((.(((..((.((.....))))..))))))))..((....))...)))))))))...................... ( -26.20, z-score = -1.74, R) >droAna3.scaffold_12984 185678 77 - 754457 ------CAUCAUCGACAUCCUCCCUCCUUCGUUUGAGGCAUCUCAGUGCGUGGUAAUCCAGGGAUGAUGAUAUUCCCCAAACU---------- ------.........((((.(((((((..((((((((....))))).))).))......))))).))))..............---------- ( -18.80, z-score = -0.59, R) >droEre2.scaffold_4929 2776410 93 - 26641161 CAUCAUCAUCAUUGGCAUCUCGACAUCACCAUUUUGGGGCCUCGGGUGCGCGGUAAUCCAAGGAUGAUGAUACUCCCCUAAAUUCCUCAAACU .(((((((((....(((((.(((..((.((.....))))..))))))))..((....))...)))))))))...................... ( -26.20, z-score = -1.63, R) >droYak2.chr2L 2717340 93 - 22324452 CAUCAUCAUCAAUGGCAUUUCGACAUCACCAUUUUGGGGCCUCGGGUGCGCGGUAAUCCAAGGAUGAUGAUGCUCCCCUAAAGUCCUCAAACU ((((((((((....(((((.(((..((.((.....))))..))))))))..((....))...))))))))))..................... ( -25.40, z-score = -0.64, R) >droSec1.super_5 889885 87 - 5866729 ------CAUCAUUGGCAUCUCGACAUCACCAUUUUGGGGCCUUGGGUGCGCGGUAAUCCAAGGAUGAUGAUACUCCCCUAAACUCCUCAAACU ------(((((((.(((((.(((..((.((.....))))..))))))))..((....))...)))))))........................ ( -19.00, z-score = 0.62, R) >droSim1.chr2L 2683206 93 - 22036055 CAUCAUCAUCAUUGGCAUCUCGACAUCACCAUUUUGGGGCCUUGGGUGCGCGGUAAUCCAAGGAUGAUGAUACUCCCCUAAACUCCUCAAACU .(((((((((....(((((.(((..((.((.....))))..))))))))..((....))...)))))))))...................... ( -24.10, z-score = -0.92, R) >droWil1.scaffold_180772 7430708 75 + 8906247 CAUCAU-AUCAUCAACAUGCCAUCAUCAUCACCAUCAGCAUUUUGCU--GCGGUAAUCCAAGGAUGAUGAUAUUCCCU--------------- ......-..............(((((((((.....((((.....)))--).((....))...))))))))).......--------------- ( -17.80, z-score = -2.16, R) >consensus CAUCAUCAUCAUUGGCAUCUCGACAUCACCAUUUUGGGGCCUUGGGUGCGCGGUAAUCCAAGGAUGAUGAUACUCCCCUAAACUCCUCAAACU ....(((((((((.(((.(((((..((.((.....))))..))))))))..((....))...)))))))))...................... (-13.12 = -14.57 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:07 2011