| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,189,965 – 9,190,074 |
| Length | 109 |
| Max. P | 0.965643 |
| Location | 9,189,965 – 9,190,074 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 64.31 |
| Shannon entropy | 0.61890 |
| G+C content | 0.37478 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -11.88 |
| Energy contribution | -13.52 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9189965 109 + 21146708 GCACCACUUUGGCUAAUGUUUCAUUACAUUACUUAAAGUUCUGUGUAGUUGGGCUUACUUGCUUAACUUUCCACGACAAAA-UGGAACUUU--UUGAGUAUUUAGAAUU-AAA------ ((((.(((((((.((((((......)))))).)))))))...))))((((((((......))))))))(((((........-)))))....--................-...------ ( -24.50, z-score = -2.10, R) >droSec1.super_1 6712882 88 + 14215200 GCACCACUUUGGCUAAUGUUUCAUUACAUUACUUAAAGUUCUGUGUAGUUGAGCUUACUUUCUUGACUUUCCACGACAAAAACGGAAA------------------------------- ...(((((((((.((((((......)))))).)))))))..((((.(((..((........))..)))...))))........))...------------------------------- ( -18.70, z-score = -1.99, R) >droSim1.chr2R 7648897 88 + 19596830 GCACCACUUUGGCUAAUGUUUCAUUGCAUUACUUAAAGUUCUGUGUAGUUGGGCUUACUUGCUUGACUUUCCACGACAAAAACGGAAA------------------------------- ...(((((((((.((((((......)))))).)))))))..((((.(((..(((......)))..)))...))))........))...------------------------------- ( -24.10, z-score = -2.78, R) >droEre2.scaffold_4845 5964321 119 - 22589142 GCACAGCUUCGGCUAAUUAUUCAUUGCAUUACUUCAAGUGUCGUGUUGCUUGGCAUUCCUACUUGAUUUUCCACGCCCCAUAAGAACUUGUGAUGCAUCUUGUAUUGCCUAGAAUGCAA ((..(((....)))....((((...(((.(((.(((((((..(((((....)))))..).))))))........((..(((((....)))))..)).....))).)))...)))))).. ( -28.90, z-score = -1.39, R) >droYak2.chr2R 13369470 116 - 21139217 GCACAGGUUUGGCUAAUUAUUCAUUACAUUAUUUAGAGUUUCGUGUUGUUUGGCAUUCUUGCUUGAGUUUGCACGCCAAAAUAAAAGCUAC--CUUACCUGAAAUUGUC-AUCUUGCAA ...(((((..((((((.((..........)).))))(((((.......((((((.....(((........))).))))))....))))).)--)..)))))........-......... ( -21.00, z-score = 0.69, R) >consensus GCACCACUUUGGCUAAUGUUUCAUUACAUUACUUAAAGUUCUGUGUAGUUGGGCUUACUUGCUUGACUUUCCACGACAAAAAAGGAAAU_______A______A______A________ .....(((((((.((((((......)))))).)))))))..((((.((((((((......))))))))...))))............................................ (-11.88 = -13.52 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:37 2011