| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,184,975 – 9,185,077 |
| Length | 102 |
| Max. P | 0.745900 |
| Location | 9,184,975 – 9,185,077 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 62.82 |
| Shannon entropy | 0.78099 |
| G+C content | 0.46029 |
| Mean single sequence MFE | -26.77 |
| Consensus MFE | -8.82 |
| Energy contribution | -8.68 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9184975 102 + 21146708 --------UAGUGUAACCUGAGCUUUUGUCCCAUAAAAAGCU-----CUAUGAUACUUACUCGAUAUGACCACAUCCUUCUUAAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG --------.(((((.....((((((((........)))))))-----)....))))).......((..(.(((.(((........)))(((((........)))))))).)..)) ( -28.50, z-score = -2.29, R) >droWil1.scaffold_181009 2032477 86 + 3585778 -----------------------------UGUGGACUAAGCUUUUGUCACUUUUACUUACUCUUGAUGACCACAUCCUUAUCGGUGGCGCCACAGAAGUAAGUGGCAUGUGUAUU -----------------------------..........((...(((((((..(((((.((..((((((........))))))(((....)))))))))))))))))...))... ( -18.50, z-score = 0.23, R) >droGri2.scaffold_15245 10679514 115 + 18325388 UAUAACGAAAGCUUUUGUGUUAGAAAAAGCUUUUUAAAAGCUUUAUAGCUGCGAACUUACUGCUGAUGACGACAUCCUUAUUGGUUUCGCCACAGAAAUACGUGGCACGUUCGCU ......((((((((((........))))))))))....((((....))))((((((.....((..((((.(....).))))..))...(((((........)))))..)))))). ( -35.30, z-score = -3.65, R) >droVir3.scaffold_12875 20324810 84 - 20611582 ------------------------------GUGGAA-AAGCUGUUGUUCUGGUUACUUACUGCUGAUGACCACAUCGUUGUGUGUGGCGCCACAGAAGUAGGUGGCGCGUUCGUU ------------------------------..(((.-..((.(.....)..((((((((((.(((.((.((((((......))))))...))))).)))))))))))).)))... ( -23.50, z-score = 0.37, R) >droMoj3.scaffold_6496 5205522 80 + 26866924 -------------------------------UUUUGCAAGCUUU----CGCUUAACUUACUGUUGAUGACCACAUCGCCUUGCGUGGCGCCACAGAAGUAGGUGGCGCGCUGGUU -------------------------------......((((...----.))))...........((((....))))(((..(((((.((((((....)).)))).))))).))). ( -25.40, z-score = -0.44, R) >droSim1.chr2R 7643890 102 + 19596830 --------UGGUGGACCCUAUAAUUUUGUCCCAUAAAAAGCU-----CUAUGAUACUUACUCUUUAUAAAGACAUCCUUCUGGAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG --------..(.((((...........))))).....((((.-----(........................(((((....)))))..(((((........)))))).))))... ( -23.20, z-score = -0.14, R) >droSec1.super_1 6707843 102 + 14215200 --------UAGUGUAACCUGAGCUUUUGCCCCAUAAAAAGCU-----CUAUGAUACUUACUCGAUAUGACCACAUCCUUCUGGAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG --------.(((((.....((((((((........)))))))-----)....)))))..(.(((((((.((((...((((((..((....))))))))...)))))))).))).) ( -30.10, z-score = -2.18, R) >droYak2.chr2R 13364622 101 - 21139217 --------UAGUGUUACCUGAGCUUUCGCACC-CAAAAAGCU-----CUCAAAAACUUACUCGAUAUGACCACAUCCUUGUUGAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG --------.(((.......(((((((......-...))))))-----)......))).......((..(.(((.(((........)))(((((........)))))))).)..)) ( -22.82, z-score = -0.03, R) >droEre2.scaffold_4845 5959582 101 - 22589142 --------UAGUGUUACCUGAGCUUUCCGCGC-UGAAAAGCU-----CUAUGCAACUUACUCGAUAUGACCACAUCCUUCUUGAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG --------...(((.....(((((((.(....-.).))))))-----)...)))..........((..(.(((.(((........)))(((((........)))))))).)..)) ( -24.00, z-score = 0.34, R) >droAna3.scaffold_13266 16492836 101 + 19884421 --------UAGUCUUCCCACAAAGCUUUUCCC-CAAAAAGCU-----CGCCGCUACUUACUCGAUAUCACCACGUCCUUCUUGAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG --------.........((((((((((((...-..)))))))-----.(((((((((((((((((........)))((((.....)))).....).))))))))))).))))))) ( -29.50, z-score = -2.70, R) >dp4.chr3 19047219 96 - 19779522 ---------------UAUGGCAGCUUUGCUAUAAAAAAAGCUG----CUUGAGUACUCACUUGAUAUAACCACAUCCUUCUGGAUAGAGCCGCAGAAGUAGGUGGCGUGCUUGUG ---------------...(((((((((.........)))))))----)).((((((.................((((....))))...(((((........)))))))))))... ( -30.20, z-score = -1.84, R) >droPer1.super_2 8135954 96 - 9036312 ---------------UAUGGCAGCUUUGCUAUAAAAAAAGCUG----CUUGAGUACUCACUUGAUAUAACCACAUCCUUCUGGAUAGAGCCGCAGAAGUAGGUGGCGUGCUUGUG ---------------...(((((((((.........)))))))----)).((((((.................((((....))))...(((((........)))))))))))... ( -30.20, z-score = -1.84, R) >consensus ________UAGU_U_ACCUGAACUUUUGCCCCAUAAAAAGCU_____CUAUGAUACUUACUCGAUAUGACCACAUCCUUCUGGAUGGAGCCACAGAAGUAGGUGGCGUGCUUGUG ........................................................................................(((((........)))))......... ( -8.82 = -8.68 + -0.14)
| Location | 9,184,975 – 9,185,077 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 62.82 |
| Shannon entropy | 0.78099 |
| G+C content | 0.46029 |
| Mean single sequence MFE | -26.95 |
| Consensus MFE | -8.11 |
| Energy contribution | -7.94 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9184975 102 - 21146708 CACAAGCACGCCACCUACUUCUGUGGCUCCAUUAAGAAGGAUGUGGUCAUAUCGAGUAAGUAUCAUAG-----AGCUUUUUAUGGGACAAAAGCUCAGGUUACACUA-------- .........(((((.(((((.((((((..((((......))))..))))))..))))).))......(-----(((((((........)))))))).))).......-------- ( -27.00, z-score = -1.46, R) >droWil1.scaffold_181009 2032477 86 - 3585778 AAUACACAUGCCACUUACUUCUGUGGCGCCACCGAUAAGGAUGUGGUCAUCAAGAGUAAGUAAAAGUGACAAAAGCUUAGUCCACA----------------------------- ....((((((((((........)))))....((.....)))))))........((.(((((.............))))).))....----------------------------- ( -20.22, z-score = -1.01, R) >droGri2.scaffold_15245 10679514 115 - 18325388 AGCGAACGUGCCACGUAUUUCUGUGGCGAAACCAAUAAGGAUGUCGUCAUCAGCAGUAAGUUCGCAGCUAUAAAGCUUUUAAAAAGCUUUUUCUAACACAAAAGCUUUCGUUAUA .((((((.(((((((......)))))))...........((((....))))........))))))((((....)))).....(((((((((........)))))))))....... ( -31.80, z-score = -2.88, R) >droVir3.scaffold_12875 20324810 84 + 20611582 AACGAACGCGCCACCUACUUCUGUGGCGCCACACACAACGAUGUGGUCAUCAGCAGUAAGUAACCAGAACAACAGCUU-UUCCAC------------------------------ .((..(((((((((........)))))((((((........)))))).....)).))..)).................-......------------------------------ ( -18.00, z-score = -0.55, R) >droMoj3.scaffold_6496 5205522 80 - 26866924 AACCAGCGCGCCACCUACUUCUGUGGCGCCACGCAAGGCGAUGUGGUCAUCAACAGUAAGUUAAGCG----AAAGCUUGCAAAA------------------------------- .....(((((((((........)))))))..(....)))((((....))))........((.((((.----...))))))....------------------------------- ( -28.00, z-score = -1.97, R) >droSim1.chr2R 7643890 102 - 19596830 CACAAGCACGCCACCUACUUCUGUGGCUCCAUCCAGAAGGAUGUCUUUAUAAAGAGUAAGUAUCAUAG-----AGCUUUUUAUGGGACAAAAUUAUAGGGUCCACCA-------- .........(((((........)))))(((((((....))))(((((.(((((((((...........-----.)))))))))))))).........))).......-------- ( -23.80, z-score = -0.81, R) >droSec1.super_1 6707843 102 - 14215200 CACAAGCACGCCACCUACUUCUGUGGCUCCAUCCAGAAGGAUGUGGUCAUAUCGAGUAAGUAUCAUAG-----AGCUUUUUAUGGGGCAAAAGCUCAGGUUACACUA-------- .........(((((.(((((.((((((..(((((....)))))..))))))..))))).))......(-----(((((((........)))))))).))).......-------- ( -32.10, z-score = -2.49, R) >droYak2.chr2R 13364622 101 + 21139217 CACAAGCACGCCACCUACUUCUGUGGCUCCAUCAACAAGGAUGUGGUCAUAUCGAGUAAGUUUUUGAG-----AGCUUUUUG-GGUGCGAAAGCUCAGGUAACACUA-------- .........(((((.(((((.((((((..((((......))))..))))))..))))).))......(-----(((((((..-.....)))))))).))).......-------- ( -29.00, z-score = -1.19, R) >droEre2.scaffold_4845 5959582 101 + 22589142 CACAAGCACGCCACCUACUUCUGUGGCUCCAUCAAGAAGGAUGUGGUCAUAUCGAGUAAGUUGCAUAG-----AGCUUUUCA-GCGCGGAAAGCUCAGGUAACACUA-------- ...............(((((.((((((..((((......))))..))))))..))))).(((((...(-----((((((((.-....)))))))))..)))))....-------- ( -33.40, z-score = -2.63, R) >droAna3.scaffold_13266 16492836 101 - 19884421 CACAAGCACGCCACCUACUUCUGUGGCUCCAUCAAGAAGGACGUGGUGAUAUCGAGUAAGUAGCGGCG-----AGCUUUUUG-GGGAAAAGCUUUGUGGGAAGACUA-------- (((((((..(((((........)))))(((.((((((((..(((.((.....(......)..)).)))-----..)))))))-))))...)).))))).........-------- ( -30.60, z-score = -0.74, R) >dp4.chr3 19047219 96 + 19779522 CACAAGCACGCCACCUACUUCUGCGGCUCUAUCCAGAAGGAUGUGGUUAUAUCAAGUGAGUACUCAAG----CAGCUUUUUUUAUAGCAAAGCUGCCAUA--------------- (((......(((((...((((((.((.....))))))))...)))))........))).........(----(((((((.........))))))))....--------------- ( -24.74, z-score = -0.95, R) >droPer1.super_2 8135954 96 + 9036312 CACAAGCACGCCACCUACUUCUGCGGCUCUAUCCAGAAGGAUGUGGUUAUAUCAAGUGAGUACUCAAG----CAGCUUUUUUUAUAGCAAAGCUGCCAUA--------------- (((......(((((...((((((.((.....))))))))...)))))........))).........(----(((((((.........))))))))....--------------- ( -24.74, z-score = -0.95, R) >consensus CACAAGCACGCCACCUACUUCUGUGGCUCCAUCCAGAAGGAUGUGGUCAUAUCGAGUAAGUAUCAAAG_____AGCUUUUUAUAGGGCAAAAGUUCAGGU_A_ACUA________ .((..((..(((((........))))).((((..........)))).........))..))...................................................... ( -8.11 = -7.94 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:36 2011