| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,179,113 – 9,179,221 |
| Length | 108 |
| Max. P | 0.930396 |
| Location | 9,179,113 – 9,179,221 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.74 |
| Shannon entropy | 0.57457 |
| G+C content | 0.47966 |
| Mean single sequence MFE | -34.55 |
| Consensus MFE | -14.54 |
| Energy contribution | -15.92 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9179113 108 - 21146708 UAACAAAGAUCGUUAGCUGGAGGAAUUAUUGGAGCAGCUU----UUCCAGCGGCUUUAGCCAGUCGUCAGUUCGAGU-GGGGAAAAUAGUUUCUCACAGCUGGCCGCUCUGCC----- ......(((.(((((((((((((((((((((((((.(((.----....))).)))))..(((.(((......))).)-))....))))))))))).))))))).)).)))...----- ( -40.60, z-score = -2.87, R) >droSim1.chr2R 7637559 108 - 19596830 UAACAAAGAUCGUUAGCUGGAGGAAUUAUUGGAGCAGCUU----UUCCAGCGGCUUUAGCCAGUCGUCAGUUCGAGU-GGGGAAAAUAGUUUCUCACAGCUGGCCGCUCUGCC----- ......(((.(((((((((((((((((((((((((.(((.----....))).)))))..(((.(((......))).)-))....))))))))))).))))))).)).)))...----- ( -40.60, z-score = -2.87, R) >droSec1.super_1 6701834 108 - 14215200 UAACAAAGAUCGUUAGCUGGAGGAAUUAUUGGAGCAGCUU----UUCCAGCGGCUUUAGCCAGUCGUCAGUUCGAGU-GGGGAAAAUAGUUUCUCACAGCUGGCCGCUCUGUC----- ..(((.((...((((((((((((((((((((((((.(((.----....))).)))))..(((.(((......))).)-))....))))))))))).))))))))..)).))).----- ( -41.50, z-score = -3.52, R) >droYak2.chr2R 13358410 105 + 21139217 UAACAAAGAUCGUUAGCUGUAGGAAUUAUUGGAGCAGCUU----UUCCAGCGGCUUUAGCCAGCCGUCAGUUCGAGU-GGGGAAAAUAGUUUCUCACAGCUGGC---UCUGCC----- ......(((..(((((((((((((((((((......((((----..(..((((((......))))))..)...))))-......)))))))))).)))))))))---)))...----- ( -34.80, z-score = -1.72, R) >droEre2.scaffold_4845 5953760 105 + 22589142 UAACAAAGAUCGUUAGCUGUAGGAAUUAUUGGAGCAGCUU----UUCCAGCGGCUUUGGCCAGCCAUCAGUUCGAGU-GGGGAAAAUAGUUUCUCACAGCUGGC---UCCGCC----- ...(((((.(((((((((((.............)))))).----....))))))))))((((((..((.....))((-((((((.....)))))))).))))))---......----- ( -33.42, z-score = -1.22, R) >droAna3.scaffold_13266 16487902 118 - 19884421 CAACAAUGAUCGUUAGCAGAGGGAAUUAUUGGAGCAACUCCAAGCGACUUCGGAUUUGGCCAAAACCCACUUCCAGUCACGAAAAAUAGUUUUGCUUGGCAACUUUUGCUGCUCUGUG ...............(((((((((((((((((((...))))..(.((((..(((..(((.......)))..))))))).)....)))))))))....((((.....)))).)))))). ( -29.80, z-score = -0.61, R) >dp4.chr3 19041620 87 + 19779522 UCACUGGGAUCGUUCCUUCAAGGAAUUAUUGGGGCAACUU---------CAAGAAAUAGUUUCUCUCCUUUUUUUGUUGUUGCUGCUGCCUCUGCC---------------------- .((..(((((.(((((.....))))).)))(.((((((..---------(((((((..(.......)..)))))))..)))))).)..))..))..---------------------- ( -21.10, z-score = -0.87, R) >consensus UAACAAAGAUCGUUAGCUGGAGGAAUUAUUGGAGCAGCUU____UUCCAGCGGCUUUAGCCAGUCGUCAGUUCGAGU_GGGGAAAAUAGUUUCUCACAGCUGGC___UCUGCC_____ ...........((((((((..(((((((((......((((.........(((((....))).)).........)))).......)))))))))...)))))))).............. (-14.54 = -15.92 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:34 2011