| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,166,826 – 9,166,931 |
| Length | 105 |
| Max. P | 0.553644 |
| Location | 9,166,826 – 9,166,931 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.25 |
| Shannon entropy | 0.26618 |
| G+C content | 0.47534 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -15.33 |
| Energy contribution | -15.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9166826 105 - 21146708 -GGGCGUUUGUCAUAAAACGCCACUCGUUCACAAGUGUUCAAGUGUUGUGCACACAAAGUGCAUUCAGUUGGCCAUUACCCAACCCAGCCCAACCCAACACUCAGC -.(((((((......)))))))....(..((....))..).((((((((((((.....)))))....(((((.......)))))...........))))))).... ( -29.40, z-score = -2.47, R) >droEre2.scaffold_4845 5941996 82 + 22589142 -GAGCGUUUGUCAUAAAACGCCACUCGUUCA--------CAAGUGUUGUGCACACAAAGUGCAUUCAGUUCGCCAUUACCCAACCCA---CAAA------------ -..((((((......))))))((((.(....--------).))))..((((((.....)))))).......................---....------------ ( -16.20, z-score = -1.23, R) >droYak2.chr2R 13346208 83 + 21139217 AAAGCGUUUGUCAUAAAACGCCACUCGUUCA--------CAAGUGUUGUGCACACAAAGUGCAUUCAGUUUGCCAUUACCCAAGCCA---CAGC------------ ...((((((......))))))((((.(....--------).))))..((((((.....))))))...(((((........)))))..---....------------ ( -18.40, z-score = -1.20, R) >consensus _GAGCGUUUGUCAUAAAACGCCACUCGUUCA________CAAGUGUUGUGCACACAAAGUGCAUUCAGUUCGCCAUUACCCAACCCA___CAAC____________ ...((((((......))))))...................((.((..((((((.....)))))).)).)).................................... (-15.33 = -15.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:32 2011