| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,166,452 – 9,166,555 |
| Length | 103 |
| Max. P | 0.717696 |
| Location | 9,166,452 – 9,166,555 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.67 |
| Shannon entropy | 0.49152 |
| G+C content | 0.41764 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -17.43 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9166452 103 + 21146708 AGUGUGGCUUGUUUUU-GGUCAGAAAACAGCAAACAAAUGUUUGUGCCAGUU---GUGUAACUGGAGUGCAUUCCUCCGGAAACUGGUCAUGUCCAGUUGGAUAUCA ...((((((.((((((-((...(((.((.((((((....)))))).((((((---....)))))).))...)))..)))))))).))))))((((....)))).... ( -33.10, z-score = -2.19, R) >droSim1.chr2R 7624946 107 + 19596830 AGUUGGGCUUGUUUUUUGGUCAGAAAACAGCAAACAAAUGUUUGUGCCAUGUGCCAUGUAACUGGAGUGCAUUCCUCCGGAAACUGGUCAUGUCUAGUUGGAUAUUG .....(((.((((((((....))))))))((((((....)))))))))(((.((((.((..((((((.......))))))..)))))))))((((....)))).... ( -30.60, z-score = -1.14, R) >droSec1.super_1 6689087 103 + 14215200 AGUUGGUCUUGUUUUUUGGUCAGAAAACAGCAAACAAAUGUGUGUGCCAUG----UUGUAACUGGAGUGCAUUCCUCCGGAAACUGGUCAUGUCCAGUUGGAUAUCG ................((..(((...((((((.(((......)))....))----))))..((((((.......))))))...)))..))(((((....)))))... ( -26.00, z-score = -0.45, R) >droYak2.chr2R 13345823 102 - 21139217 AGUUGGGCGUGUUUUU-GGACAGAGAACAACAAACACAUGUUUGUGUCGAG----AUGCUAGUGGAGUGCAUUCCUCCGGAAACUGGUCAUGUCCAGUUGGAUAUCG .....(((..((((((-(((....((...((((((....)))))).))(..----((((.........))))..))))))))))..)))((((((....)))))).. ( -29.80, z-score = -0.70, R) >droEre2.scaffold_4845 5941653 101 - 22589142 -AUUGGGCAUGUUUUU-GGACAAAAGACAACAAACAAAUGUUUGGGCCGAG----AUGUUACUAGAGUGCAUUCCUCCGGAAACUGGUCAUGUCCAGUUGGAUAUCG -.((((.(.(((((((-.....))))))).(((((....)))))).))))(----(((((.(..(((.......)))..).((((((......)))))).)))))). ( -29.30, z-score = -1.53, R) >droGri2.scaffold_15245 10656595 98 + 18325388 -GGUGGUUUCAUUUUU-UGUUUAAAAAUUGCAAA-AUCUGCAUUUUCUGUUU---UUUUAAUCAGA---UAUGUCUCUGACAGCUUGCCAUUUAAAUUAUUUCGUCG -((((((((((..(((-(((.........)))))-)...((((..((((.((---....)).))))---.))))...))).))).)))).................. ( -12.30, z-score = 0.10, R) >consensus AGUUGGGCUUGUUUUU_GGUCAGAAAACAGCAAACAAAUGUUUGUGCCAUG____AUGUAACUGGAGUGCAUUCCUCCGGAAACUGGUCAUGUCCAGUUGGAUAUCG .....(((.(((((((......)))))))((((((....))))))))).............((((((.......)))))).((((((......))))))........ (-17.43 = -17.88 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:31 2011