| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,141,539 – 9,141,642 |
| Length | 103 |
| Max. P | 0.759765 |
| Location | 9,141,539 – 9,141,642 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.46 |
| Shannon entropy | 0.51784 |
| G+C content | 0.55340 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -18.14 |
| Energy contribution | -19.46 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9141539 103 - 21146708 CAGUGGUUGUGCCACCAGAAUCAACAGCUGAGCCCGAAGUGAUCUCCAAGCCAGAGGAGGGCAACCAACCAGCUGGCGAUGAGCCGCGGGAGGAGAAGCCACA ..((((((...((.((........((((((..............(((........)))((....))...))))))(((......))).)).))...)))))). ( -35.90, z-score = -1.22, R) >droSim1.chr2R 7599434 103 - 19596830 CAGUGGUUGUGCCACCAGAAUCAACAGCUGAGCCCGAAGGGAUCUCCAAGCCAGAGGAGGCCAGCCAACCAGUUGGCGAUGAACCGCAGGAGGAGAAGCCACA ..((((((...((.((.....((((.((((.((((....))..((((........))))))))))......))))(((......))).)).))...)))))). ( -36.10, z-score = -1.91, R) >droSec1.super_1 6664216 103 - 14215200 CAGUGGUUGUGCCACCAGAAUCAACAGCUGAGCCCGAAGGGAUCUCCAAGCCAGAGGAGGCCAGCCAACCAGUUGGCGAUGAACCGCAGGAGGAGAAGCCACA ..((((((...((.((.....((((.((((.((((....))..((((........))))))))))......))))(((......))).)).))...)))))). ( -36.10, z-score = -1.91, R) >droEre2.scaffold_4845 5914997 103 + 22589142 CAGAGGUUGUGCUACCAGAAACAACGGCUGAGCCCGAAGGGAUCUCCAGGCCAGAGGAGCGCAGCCCACCACUUGGCGAUGAGCCGCGGGAGGAGAAGCCACA ..(.(((((((((.((.(......)(((((((.((....))..)))..))))...)))))))))))).((.(.((((.....)))).))).((.....))... ( -36.60, z-score = -0.70, R) >droWil1.scaffold_181009 1971304 103 - 3585778 AGGCGAUAUUAGCAGAGAAAACAAAUGAAGAGCUACAGGAAAAUGUCAAUGAAAAUGUGGAAAUGUCAUCUAAACAGAAUAUAGAGCAGACAAAACAGUCUGA ..((.......))...........((((....(((((.....((....)).....))))).....)))).................(((((......))))). ( -14.30, z-score = -0.15, R) >consensus CAGUGGUUGUGCCACCAGAAUCAACAGCUGAGCCCGAAGGGAUCUCCAAGCCAGAGGAGGCCAGCCAACCAGUUGGCGAUGAACCGCAGGAGGAGAAGCCACA ..((((((...((.((........((((((...((....))..((((........))))..........))))))(((......))).)).))...)))))). (-18.14 = -19.46 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:29 2011