| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,099,065 – 9,099,168 |
| Length | 103 |
| Max. P | 0.613165 |
| Location | 9,099,065 – 9,099,168 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.81 |
| Shannon entropy | 0.51343 |
| G+C content | 0.42599 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -13.31 |
| Energy contribution | -12.98 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9099065 103 + 21146708 --------AUUUGAUUGAACCAUCA--------AUUGGAGAGUACUCACACAAACUUAGACCUAUGAGCCAAAAACUGGUGGUACAGUCGAACGACUUGGUCACUAUCCAAAUCAGGAU --------.((((((((.(((((((--------.((((.((....)).......((((......))))))))....))))))).)))))))).((.((((.......)))).))..... ( -25.70, z-score = -1.61, R) >droAna3.scaffold_13266 13048993 118 - 19884421 AAAUCAUUAAAAAAUAGGCCGAAAAGA-UUAUAUUUAAAUACCAGUUACCUAGACUCAAGCCGAUUAACCAGUAUGAGGUGGUACAAUCAAAGGAUUUUGUGGCAAUCCAAGUCACAAU .((((...........(((........-(((....))).....((((.....))))...)))((((.((((.(....).))))..))))....))))(((((((.......))))))). ( -17.90, z-score = 0.02, R) >droEre2.scaffold_4845 5867649 100 - 22589142 --------UUUCGAUUGCCCCCCC-----------UUGAGAGUACUCACACAGACUCAGGCCUAUCAGCCAAAAACUGGUGGUGCAGUCGAACGACUUGGUCACUAUCCAAAUUAGGAU --------.(((((((((.((.((-----------....((((.((.....)))))).(((......))).......)).)).))))))))).(((...)))...((((......)))) ( -29.50, z-score = -2.08, R) >droYak2.chr2R 13273775 119 - 21139217 UUUUGAUUGAUUGAUUGGCCCUUGACACUUGGCACUUGAGAGUACUCACACAGACUCAGGCCUAUCAGCCAAAAAGUGGUUGUGCAGUCAAACGACUUGGUCACUAUCCAAAUCAGGAU ((((((((....((((((((..((.(((..(.(((((..((((.((.....)))))).(((......)))...))))).).)))))(((....)))..)))))..)))..)))))))). ( -30.30, z-score = -0.16, R) >droSec1.super_1 6621598 103 + 14215200 --------AUUUGAUUGAACCACCA--------AUUGGAGAGUACUCACACAAACUUAGACCUAUGAGCCAAAAACUGGUGGUGCAGUCGAACGACUUGGCCACUAUCCAAAUCAGGAU --------.((((((((.(((((((--------.((((.((....)).......((((......))))))))....))))))).)))))))).((.((((.......)))).))..... ( -27.30, z-score = -2.16, R) >droSim1.chr2R 7553093 103 + 19596830 --------AUUCGAUUGAACCAGCA--------AUUGGAGAGUACUCACACAAACUUAGACCUAUGAGCCAAAAACUGGUGGUGCAGUCGAAAGACUUGGCCACUAUCCAAAUCAGGAU --------.((((((((......))--------))))))...............((((......))))........(((((((..((((....))))..)))))))(((......))). ( -26.30, z-score = -1.62, R) >consensus ________AUUUGAUUGAACCACCA________AUUGGAGAGUACUCACACAAACUCAGACCUAUGAGCCAAAAACUGGUGGUGCAGUCGAACGACUUGGUCACUAUCCAAAUCAGGAU ..........(((((((....................(((....)))............(((.....((((.....))))))).)))))))..((.((((.......)))).))..... (-13.31 = -12.98 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:26 2011