| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,083,961 – 9,084,057 |
| Length | 96 |
| Max. P | 0.882350 |
| Location | 9,083,961 – 9,084,057 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 64.71 |
| Shannon entropy | 0.68002 |
| G+C content | 0.38326 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -8.59 |
| Energy contribution | -9.51 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9083961 96 + 21146708 AGGUUCUAUCCAAACCGCAGCUGCUUUGUAUAUAAAGACUACAAAGGCAGCUCAAAAAUGCAUAGAGACUC-----------CUGAUCAAA--CAAUUCACAUUGUAAA (((((((((.((......((((((((((((.........)))))).))))))......)).))))))...)-----------))......(--((((....)))))... ( -20.30, z-score = -1.85, R) >droSim1.chr2R 7537724 106 + 19596830 AGGUUCUAUA-AAACCGCAGCUGCCUUCUAUAUAAAGACUUCAAAAGCAGCUCAAAAAUGCUUAGAGCCUCCCAAAUUCAGUUCGAUCUAA--CAAUUGGCGUUGUAAA .((((.....-.))))(((((.(((...................(((((.........))))).((((............)))).......--.....))))))))... ( -18.60, z-score = -0.38, R) >droSec1.super_1 6606526 98 + 14215200 AGGUUCUAUA-AAACCGCAGCUGCCUUCUAUAUAAAGACUUCAAAGGCAGCUCAAAAAUGCUUAGAGCCUC--------AGUUCGAUCUAA--CAAUUGGCGUUGUAAA ((((((((..-.......(((((((((((......)))......))))))))..........)))))))).--------...........(--((((....)))))... ( -23.81, z-score = -1.66, R) >droYak2.chr2R 13258339 95 - 21139217 AGGUUUUAUA-AAACCGCAGCUGCUUUUUAAAUAAAGACUACAAAGGCAGCUCGUA-----------CCUUCUAAUUUCAGAUCGAUCUAG--CUAUUCAUACUGUAAA .(((((....-)))))((.(((((((((..............)))))))))(((..-----------...(((......))).)))....)--)............... ( -17.34, z-score = -0.97, R) >droEre2.scaffold_4845 5852396 106 - 22589142 AGGUUCUAUA-AAACCGCAGCUGCUUUCUAAAUAAAGACUACAAAGGCAGCUCAAGAAUGCAUUAAGCCUUCUCAUUUCAGUUCGAUCUAG--CUAUUCGCAUUGUAAA .((((.....-.))))(.(((((((((((......)))......))))))))).((((.((.....)).)))).....((((.(((.....--....))).)))).... ( -20.40, z-score = -0.42, R) >droMoj3.scaffold_6496 24655475 106 + 26866924 CCGCGAUAGCUGAGCAGCUGUCGCCUUCAACAUCAAGGC---GUGGCCACACCAAAUAUCACUAAUAAUAAAAGACUACAAACUGUCUUAGAUUAACGAAACGUUUAAA (((((((((((....)))))))(((((.......)))))---))))...................((((..(((((........)))))..)))).............. ( -27.10, z-score = -3.41, R) >consensus AGGUUCUAUA_AAACCGCAGCUGCCUUCUAUAUAAAGACUACAAAGGCAGCUCAAAAAUGCAUAGAGCCUCC__A_UUCAGUUCGAUCUAA__CAAUUCACAUUGUAAA .((((.......))))(.(((((((((................))))))))))........................................................ ( -8.59 = -9.51 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:25 2011