| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,071,220 – 9,071,324 |
| Length | 104 |
| Max. P | 0.755816 |
| Location | 9,071,220 – 9,071,324 |
|---|---|
| Length | 104 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 50.45 |
| Shannon entropy | 0.95057 |
| G+C content | 0.49869 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | 0.00 |
| Energy contribution | 0.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 0.00 |
| Mean z-score | -2.87 |
| Structure conservation index | -0.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.755816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9071220 104 - 21146708 CACUUAUUGUUUCCCACUCU------UUGGACACAACAC-AAACACAAUCCGUUGCCAGCUCCUCCUGCUCCGCCCCAAGCGAUGGAGGAGGAGGAGGAGUCUACACAAAG ......((((.(((......------..))).))))...-..................(((((((((.((((...(((.....))).)))).))))))))).......... ( -32.10, z-score = -2.45, R) >droSim1.chr2R 7522352 101 - 19596830 CACUUAUUGUUUCCCACUCU------UUGGACUCAACAC-AAACACAAUCCGUUGGCAGCUCCUCCUGCUCCCCCGC---AAACAAAGGAGGAGGAGGAGUUUGUCCAACG ......(((..(((......------..)))..)))...-..........(((((((((((((((((.((((.....---.......)))).)))))))).))).)))))) ( -36.40, z-score = -4.33, R) >droSec1.super_1 6593914 101 - 14215200 CACUUAUUGUUUCCCACUCU------UUGGACAGAACAC-AAACACAAUCCGUUGCCAGCUCCUCCUGCUCCCCCGC---AAGCAAAGGAGAAGGAGGAGUCUGUCCAACG ....................------(((((((((....-.(((.......))).....((((((((.((((..(..---..)....)))).))))))))))))))))).. ( -34.60, z-score = -4.12, R) >droYak2.chr2R 13245390 105 + 21139217 CACUUAUUGUUUCCCACUCCACCACACUGGACACCACACAAAACCCAAUCCGUUCCCAGCUCCUGCUCCUUCGC------AAAAGGUGUAGGAGGAGGAGUCUGACCAACG ......((((.......((((......))))......)))).........((((..((((((((.(((((.(((------.....))).))))).))))).)))...)))) ( -29.72, z-score = -2.62, R) >droAna3.scaffold_13266 13021697 82 + 19884421 ACCCUUCCCCUUCCCAUUU-------UUUGACACUA----AACCACG--UCGUUAGCAGCUGCCCCCCCUUUU-------GGGGAGGCUAC--UGCUGACCAUG------- ...................-------...(((....----......)--))((((((((..(((.((((....-------)))).)))..)--)))))))....------- ( -29.00, z-score = -5.96, R) >dp4.chr3 9216084 93 + 19779522 CUCUUCUUGUUUCUUAU---------CUGUGAACCAA---AGACACUAUCCGUUGGCAACACUGCACUAUCCCUCCCCUUAGAAGGGGUGG--GGGAUACUCCAACU---- ....((((..(((....---------....)))...)---)))........(((((((....)))..((((((((((((.....)))).))--))))))...)))).---- ( -26.80, z-score = -1.56, R) >droPer1.super_4 1271523 93 + 7162766 CUCUUCUUGUUUCUUAU---------CUGUGAACCAA---AGACACUAUCCGUUGGCAACACUGCACUAUCCCUCCCCUUAGAAGGGGUGG--GGGGUACUCCAACU---- ....((((..(((....---------....)))...)---)))........(((((((....)))..((((((((((((.....)))).))--))))))...)))).---- ( -26.20, z-score = -0.74, R) >droWil1.scaffold_180700 4847679 86 - 6630534 -----CUCUCUUCCUAUC--------UAUCUUACU-----AAAUAUUUGCUCCUCUUGAUUUCUUCUCUCUCUGGCCAAUCGACAGAAGAAAUUGUUCAUAACU------- -----.............--------.........-----.................((((((((((.((...........)).))))))))))..........------- ( -10.00, z-score = -1.16, R) >consensus CACUUAUUGUUUCCCACUC_______UUGGACACAAC___AAACACAAUCCGUUGGCAGCUCCUCCUCCUCCCCCCC___AGAAAGAGGAG_AGGAGGAGUCUGACC____ ............................................................................................................... ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:24 2011