| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,068,452 – 9,068,549 |
| Length | 97 |
| Max. P | 0.886204 |
| Location | 9,068,452 – 9,068,549 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 74.12 |
| Shannon entropy | 0.52703 |
| G+C content | 0.44470 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -11.65 |
| Energy contribution | -12.01 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9068452 97 - 21146708 UCAAUGCGGUGAACGAUGUGAACACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACGCUCUUUCCAACUAACCAUGCCCACUAUUGCCCAAU------------ .(((((((((((.(((.((....)).))))))))))((((((((.((....)).))).........)))))................))))......------------ ( -20.80, z-score = -1.47, R) >droPer1.super_4 1268630 108 + 7162766 UCAAUGCGGUGAACGAUGUGAACACAUCGUCCCUGCUGGAGACCAAAGAAAUUAGGUAAACACUUCCGCUAA-UCUCUCUCCCUAAUCUACUCUACUCUACAUCCCUUU .....((((.(.(((((((....))))))).))))).(((((.....((.(((((.............))))-).)))))))........................... ( -21.72, z-score = -2.10, R) >dp4.chr3 9213212 108 + 19779522 UCAAUGCGGUGAACGAUGUGAACACAUCGUCCCUGCUGGAGACCAAAGAAAUUAGGUAAACACUUCCGCUAA-UCUCUCUCCCUAAUCUACUCUACUCUACAUCCCUUU .....((((.(.(((((((....))))))).))))).(((((.....((.(((((.............))))-).)))))))........................... ( -21.72, z-score = -2.10, R) >droAna3.scaffold_13266 13018942 90 + 19884421 UCAAUGCGGUGAACGAUGUGAACACCUCGUCCCUGCUGGAGACCAAAGAAAUUAGGUAAA-GCUCUUUUU------CCAGAACUUCUAUCCCCCAAU------------ .....((((.(.((((.((....)).)))).)))))(((..(((.((....)).))).((-(.(((....------..))).))).......)))..------------ ( -17.20, z-score = -0.25, R) >droEre2.scaffold_4845 5836443 97 + 22589142 UCAAUGCGGUGAACGAUGUGAACACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACGCUCUUUCCAACUAACCAAACCCACUAUUGCCCACU------------ .(((((((((((.(((.((....)).))))))))))((((((((.((....)).))).........)))))................))))......------------ ( -20.80, z-score = -1.91, R) >droYak2.chr2R 13242587 97 + 21139217 UCAAUGCGGUGAACGAUGUGAACACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACGCUCUUUCCAACUAACCAAGCCCACUAUUGCCCACU------------ .(((((((((((.(((.((....)).))))))))))((((((((.((....)).))).........)))))................))))......------------ ( -20.80, z-score = -1.41, R) >droSec1.super_1 6591142 97 - 14215200 UCAAUGCGGUAAACGAUGUGAACACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACGCUCUUUCCAACUAACCAUGCCCACUAUUGCCCACU------------ .(((((((((..((((.((....)).)))).)))))((((((((.((....)).))).........)))))................))))......------------ ( -17.00, z-score = -0.38, R) >droSim1.chr2R 7519580 97 - 19596830 UCAAUGCGGUGAACGAUGUGAACACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACGCUCUUUCCAACUAACCAUGCCCACUAUUGCCCACU------------ .(((((((((((.(((.((....)).))))))))))((((((((.((....)).))).........)))))................))))......------------ ( -20.80, z-score = -1.46, R) >droVir3.scaffold_12875 15163003 91 + 20611582 UAAACGCGGUAAACGAUGUGAACAACUCGUCGCUGCUGGAGACCAAAGAAAUUAGGUAAACACAGUCACUAA-AUCUUAACU--UUUGCUCUCU--------------- .....(((((..((((.((.....)))))).))))).(((((.(((((...(((((................-..))))).)--)))).)))))--------------- ( -17.67, z-score = -0.80, R) >droMoj3.scaffold_6496 24637028 88 - 26866924 UAAAUGCGGUGAACGAUGUGAAUACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACACACUCAA-AU-AGCUCU----UUUUCCCCUCU--------------- .....(((((((.(((.((....)).)))))))))).(((((((.((....)).))).......((...-..-))....----..)))).....--------------- ( -17.30, z-score = -1.20, R) >droGri2.scaffold_15096 13366 100 - 68263 UAAAUGCGGUGAACGAUGUGAACACCUCAUCCCUGCUGGAGACCAAAGAAAUUAGGUAAAAAAAACAAAUAC-AGUUGAACUAACUUUAUCUCUGCUCUCU-------- .....((((.(...((((.(.....).))))))))).(((((.((.(((....((((......(((......-.)))......))))..))).)).)))))-------- ( -15.60, z-score = -0.49, R) >consensus UCAAUGCGGUGAACGAUGUGAACACCUCGUCGCUGCUGGAAACCAAAGAAAUUAGGUAAACGCUCUUUCCAA_UAACCAUCCCCACUAUUCCCCACU____________ .....((((.((.(((.((....)).))))).)))).....(((.((....)).))).................................................... (-11.65 = -12.01 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:23 2011