| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,065,906 – 9,065,996 |
| Length | 90 |
| Max. P | 0.553075 |
| Location | 9,065,906 – 9,065,996 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 78.30 |
| Shannon entropy | 0.43170 |
| G+C content | 0.65291 |
| Mean single sequence MFE | -37.67 |
| Consensus MFE | -20.43 |
| Energy contribution | -20.65 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9065906 90 - 21146708 CAUCCACCGUGGUGAGCAGCAGUGCGAGCAAUGGCCUCAAGCCGGCGGCCAAGAAGACACCAGUCAUUCUGCUGGCCGCUCGUGGUGCCG ....(((....)))....(((.(((((((..((((.....))))..((((((((((((....))).))))..)))))))))))).))).. ( -38.40, z-score = -1.56, R) >droSim1.chr2R 7517060 90 - 19596830 CAUCCACCGUGGUGAGCAGCAGUGCGAGCAAUGGCCUCAAGCCGGCGGCCAAGAAGACACCAGUCAUUCUGCUGGCCGCUCGUGGUGCCG ....(((....)))....(((.(((((((..((((.....))))..((((((((((((....))).))))..)))))))))))).))).. ( -38.40, z-score = -1.56, R) >droSec1.super_1 6588666 90 - 14215200 CAUCCACCGUGGUGAGCAGCAGUGCGAGCAAUGGCCUCAAGCCGGCGGCCAAGAAGACACCAGUCAUUCUGCUGGCCGCUCGUGGUGCCG ....(((....)))....(((.(((((((..((((.....))))..((((((((((((....))).))))..)))))))))))).))).. ( -38.40, z-score = -1.56, R) >droYak2.chr2R 13239999 90 + 21139217 CGUCCGCCGUGGUGAGCAGCAGCGCGAGCAAUGGCCUCAAGCCGGCGGCCAAGAAGACACCUGUCAUUCUGCUGGCCGCUCGUGGUGCCG .(..(((....)))..).(((.(((((((..((((.....))))..((((((((((((....))).))))..)))))))))))).))).. ( -43.20, z-score = -1.98, R) >droEre2.scaffold_4845 5833893 90 + 22589142 CGUCCACCGUGGUGAGCAGCAGCGCGAGCAAUGGCCUCAAGCCGGCGGCCAAGAAGACACCUGUCAUUCUGCUGGCCGCUCGUGGUGCCG .(..(((....)))..).(((.(((((((..((((.....))))..((((((((((((....))).))))..)))))))))))).))).. ( -43.60, z-score = -2.49, R) >droAna3.scaffold_13266 13016534 69 + 19884421 ---------------------CUGGAAGUAAUGGGCUGAAGGCGGCGGCCAAGAAGACACCCGUCAUCCUGCUGGCCGCCCGCGGCGGUG ---------------------.............((((..((((((.(.((.((.(((....))).)).)).).))))))..)))).... ( -26.40, z-score = 0.14, R) >dp4.chr3 9210667 87 + 19779522 ---UCUCUGUGGUGAGUGGCAGCGGAAUCAAUGGCUUCAAGGCCGGAGCCAAAAAGACGCCGGUGAUCCUGCUAGCCGCCCGCGGCCCUG ---...((((((...((((((((((.((((.((((.((..(((....))).....)).)))).)))).))))).)))))))))))..... ( -36.50, z-score = -1.48, R) >droPer1.super_4 1266074 87 + 7162766 ---UCUCUGUGGUGAGUGGCAGCGGAAUCAAUGGCUUCAAGGCCGGAGCCAAAAAGACGCCGGUGAUCCUGCUAGCCGCCCGCGGCCCUG ---...((((((...((((((((((.((((.((((.((..(((....))).....)).)))).)))).))))).)))))))))))..... ( -36.50, z-score = -1.48, R) >consensus C_UCCACCGUGGUGAGCAGCAGCGCGAGCAAUGGCCUCAAGCCGGCGGCCAAGAAGACACCAGUCAUUCUGCUGGCCGCUCGUGGUGCCG ....(((....)))..((((((.........(((((.(......).)))))....(((....)))...))))))((((....)))).... (-20.43 = -20.65 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:22 2011