| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,020,070 – 9,020,161 |
| Length | 91 |
| Max. P | 0.866965 |
| Location | 9,020,070 – 9,020,161 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 50.95 |
| Shannon entropy | 0.94761 |
| G+C content | 0.34710 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -2.19 |
| Energy contribution | -3.08 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.57 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.12 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9020070 91 - 21146708 ------------AAAUAAAGAU-UUCCACAUUUUCGGAACUUCUUUUUCCGAAUUCCGAAAACUGAUGUACCAUUAGAGUUUACACAAUUAUUAACCAGUCAAU ------------.......(((-(......(((((((((.(((.......))))))))))))((((((...))))))....................))))... ( -15.60, z-score = -2.53, R) >droSim1.chr2R 7475538 103 - 19596830 AAUCGCUGACCCACACAAAGAU-UUCCAGAUUUUCGGAACUUCUUUUUCCGAAUUCCGAAAACUGAUGAUCAAUUAUAGUUUACGCCAUUACUAACCAGUCAAU ......((((.........(((-(..(((.(((((((((.(((.......)))))))))))))))..)))).....((((..........))))....)))).. ( -22.50, z-score = -3.98, R) >droSec1.super_1 6547199 103 - 14215200 AAACGCUGACCCACACAAAGAU-UUCCAGAUUUUCGGAACUUCUUUUUCCGAAUUCCGAAAACUGAUGAUCAAUUAUGGUUUACACCAUUACUAACCAGUCAAU ......((((.........(((-(..(((.(((((((((.(((.......)))))))))))))))..)))).....(((((............))))))))).. ( -25.20, z-score = -4.62, R) >droYak2.chr2R 13198041 100 + 21139217 -AAGGCUGAGCGACACAAAGAU-UUCAGUAUUUUCGGUAAUUAUUUUUCCGAGUUCCAAAAACUCAU-UGUAGUUA-GUUGAAAAAAAAAAAUCCUGUGGCAUU -........((.(((....(((-((...(.((((((((((((((......(((((.....)))))..-.)))))))-.))))))).)..))))).))).))... ( -17.40, z-score = -0.46, R) >dp4.chr3 5794682 73 - 19779522 ------------CGAUACAUAU-CGCAUCGUUAUUCUGAUUCCUCUUUUC----------AACCUAUUCGCGUGUGAAUUUAAAAAAAUUACCAAC-------- ------------.........(-(((((((......(((.........))----------).......)).))))))...................-------- ( -6.42, z-score = -0.19, R) >droWil1.scaffold_181148 5313916 96 - 5435427 ------UAAUCAAGACUGGCUUAAGCCGGCUUGAGGUCAAUACAUCUUACUAAUUUAUAAGAUUUUAAAUAAUAGGCAGCACAAAACGUGAGCAGGUUGUCU-- ------...(((((.(((((....)))))))))).........((((((........))))))..........(((((((......(....)...)))))))-- ( -24.00, z-score = -2.39, R) >consensus ______UGA_C_ACACAAAGAU_UUCCAGAUUUUCGGAACUUCUUUUUCCGAAUUCCGAAAACUGAUGAUCAAUUAUAGUUUAAAAAAUUACUAACCAGUCAAU ................................(((((((.......)))))))................................................... ( -2.19 = -3.08 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:22 2011