| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,014,692 – 9,014,745 |
| Length | 53 |
| Max. P | 0.602122 |
| Location | 9,014,692 – 9,014,745 |
|---|---|
| Length | 53 |
| Sequences | 10 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 75.04 |
| Shannon entropy | 0.52577 |
| G+C content | 0.41279 |
| Mean single sequence MFE | -13.46 |
| Consensus MFE | -5.18 |
| Energy contribution | -5.93 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9014692 53 + 21146708 GGAUGCAGCAUGUCU---CAUGUUAGUAUCUGUUUUUAAUGGCAACUCCAUUAGAU ((((((((((((...---)))))).))))))...((((((((.....)))))))). ( -16.10, z-score = -2.94, R) >droSim1.chr2R 7469715 53 + 19596830 GGAUGCAGCAUGUCU---CAUGUUAGUAUCUGUUUUUAAUGGCAACUCCAUUAGAU ((((((((((((...---)))))).))))))...((((((((.....)))))))). ( -16.10, z-score = -2.94, R) >droSec1.super_1 6541686 53 + 14215200 GGAUGCAGCAUGUCU---CAUGUUAGUAUCUGUUUUUAAUGGCAACUCCAUUAGAU ((((((((((((...---)))))).))))))...((((((((.....)))))))). ( -16.10, z-score = -2.94, R) >droYak2.chr2R 13192713 53 - 21139217 GGAUGCAGCAUGUCU---CAUGUUAGUAUCUGUUUUUAAUGGCAACGCCAUUAGAU ((((((((((((...---)))))).))))))...(((((((((...))))))))). ( -18.90, z-score = -3.82, R) >droEre2.scaffold_4845 5784756 53 - 22589142 GGAUGCAGCAUGUCU---CAUGUUAGUAUCUGUUUUUAAUGGCAACUCCAUUAGAU ((((((((((((...---)))))).))))))...((((((((.....)))))))). ( -16.10, z-score = -2.94, R) >droAna3.scaffold_13266 6483452 52 + 19884421 GGAUGCAGCAUGUCU---CAUGUUAGUAUCUGUUUUUAAUGGCAACUCCAUUAGA- ((((((((((((...---)))))).))))))...((((((((.....))))))))- ( -15.50, z-score = -2.70, R) >dp4.chr3 5787704 53 + 19779522 ACAUCCUACAUGCCC---CAUAUGAGUAUCUGUUUUUAAUGGCAGCACUAUUAGAC .....(((..(((.(---(((.((((........))))))))..)))....))).. ( -5.70, z-score = 0.52, R) >droPer1.super_2 5987294 53 + 9036312 ACAUCCUACAUGCCC---CAUGUGAGUAUCUGUUUUUAAUGGCAGCACUAUUAGAC ......((((((...---))))))(((..(((((......))))).)))....... ( -7.70, z-score = 0.11, R) >droMoj3.scaffold_6496 3799890 56 + 26866924 GGGCGCGCCACGCCUACAUAUAUGUGUAUCUGCCCUUAAUGGCAACCCUAUUAGCC (((((((...))).(((((....)))))...))))(((((((.....))))))).. ( -13.80, z-score = -0.28, R) >anoGam1.chr2L 39664486 53 + 48795086 GAGUACUAUACGCUA---CACGUUAGCCUGCAUCCGCUCUACCAAGUACGCUAAAC ..(((((....((((---.....))))..((....)).......)))))....... ( -8.60, z-score = -0.35, R) >consensus GGAUGCAGCAUGUCU___CAUGUUAGUAUCUGUUUUUAAUGGCAACUCCAUUAGAU ......((((((......))))))..........((((((((.....)))))))). ( -5.18 = -5.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:20 2011