| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,007,777 – 9,007,828 |
| Length | 51 |
| Max. P | 0.975896 |
| Location | 9,007,777 – 9,007,828 |
|---|---|
| Length | 51 |
| Sequences | 9 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 88.45 |
| Shannon entropy | 0.22844 |
| G+C content | 0.48148 |
| Mean single sequence MFE | -15.66 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9007777 51 - 21146708 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUGCUCGGCGUCCU .(((((((.(((((........))))).)))))))((((....)))).... ( -16.30, z-score = -2.69, R) >droWil1.scaffold_180700 374219 51 - 6630534 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUCUAUGACGCCCU .(((((((.(((((........))))).))))))).((........))... ( -12.40, z-score = -2.22, R) >droPer1.super_2 5984056 51 - 9036312 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCACACCGGGAGACCCC .(((((((.(((((........))))).)))))))......((....)).. ( -16.30, z-score = -3.00, R) >dp4.chr3 5784446 51 - 19779522 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCACACCGGGAGACCCC .(((((((.(((((........))))).)))))))......((....)).. ( -16.30, z-score = -3.00, R) >droAna3.scaffold_13266 6479533 51 - 19884421 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCACCAUGGUGUCCU .(((((((.(((((........))))).))))))).((((....))))... ( -16.10, z-score = -2.98, R) >droEre2.scaffold_4845 5780555 51 + 22589142 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUGUGCCGCGUCCU .(((((((.(((((........))))).)))))))(((......))).... ( -14.60, z-score = -2.20, R) >droYak2.chr2R 13185709 51 + 21139217 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUGUGCGGCGUCCU .(((((((.(((((........))))).)))))))((((....)))).... ( -16.30, z-score = -2.28, R) >droSec1.super_1 6534719 51 - 14215200 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUGCUCGGCGUCCU .(((((((.(((((........))))).)))))))((((....)))).... ( -16.30, z-score = -2.69, R) >droSim1.chr2R 7462795 51 - 19596830 AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUGCUCGGCGUCCU .(((((((.(((((........))))).)))))))((((....)))).... ( -16.30, z-score = -2.69, R) >consensus AACGCCUGCUUAAUGAACAUAAAUUAGUCAGGUGUCGCUGCGCGGCGUCCU .(((((((.(((((........))))).)))))))................ (-12.10 = -12.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:19 2011