| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,998,722 – 8,998,834 |
| Length | 112 |
| Max. P | 0.733658 |
| Location | 8,998,722 – 8,998,834 |
|---|---|
| Length | 112 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 61.79 |
| Shannon entropy | 0.73797 |
| G+C content | 0.54616 |
| Mean single sequence MFE | -35.08 |
| Consensus MFE | -12.33 |
| Energy contribution | -13.41 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8998722 112 - 21146708 -GUUUCCUGGUGCCGAGUUUAAUUCGCCUGCCAGUUGCUCCUGCCUUCGUGAUGGUUGUCAGUGGCUGGUGCCACAAACAGAGACUCAGAACCAGAACAGAUCCCAAGCUCUC -(((..(((((.(.((((((.....((..((((((..((...(((........)))....))..)))))))).........)))))).).))))))))............... ( -31.24, z-score = 0.02, R) >droSim1.chr2R 7449473 112 - 19596830 -GUUUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUCGGUGAUGGUUGUCAGUGGCUGGUGCCACAAACAGAGACUCAGGACCAGAACAGAUCCCAAGCUCUC -(((..(((((.((((((((.....(((.((((((..((...(((........)))....))..)))))))))........)))))))).))))))))............... ( -42.72, z-score = -1.86, R) >droSec1.super_1 6525130 112 - 14215200 -GUUUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUCAGUGAUGGUUGUCAGUGGCUGGUGCCACAAACAGAGACUCAGAACCAGAACAGAUCCCAAGCUCUC -(((..(((((.((((((((.....(((.((((((..((...(((........)))....))..)))))))))........)))))))).))))))))............... ( -40.62, z-score = -1.89, R) >droYak2.chr2R 8002204 94 - 21139217 GUUUUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUUGGUGAUGGUUGUCAGUGGCUGGUGCCACAAACAGAUCCCAAGCUCUC------------------- ......((((((((((((...))))))).)))))..((....))(((((.(((..((((..(((((....)))))..)))))))))))).....------------------- ( -33.20, z-score = -1.85, R) >droEre2.scaffold_4845 5771670 93 + 22589142 GUUCUCCUGGUGCUGGCUUUAAUUCGGCUGCCAGUUGCUCCUGCC-UGGUGAUGGUUGUCAGUGGCUGGUGCCACAAACAGAUCCCAAGCUCUC------------------- ......((((((((((.......))))).)))))........((.-(((.(((..((((..(((((....)))))..)))))))))).))....------------------- ( -30.00, z-score = -0.42, R) >dp4.chr3 5774144 88 - 19779522 ----UUGUCCUGCUGUGGCUGAUUUGAAU-CCAGUUGCCUCUGCUGCGGAUGCUGUUGCCACAAACGGC------------AGCAGCACAGGCGACGCGGCUCUG-------- ----.......((((((((((........-.))))(((((.((((((...(((((((......))))))------------))))))).))))).))))))....-------- ( -37.50, z-score = -1.95, R) >droPer1.super_2 3106050 103 + 9036312 -CUUUCCUGCUGUUGAAACUGAUUUGAAU-CCAGUUACUCCUCUUCCUGCUGUUGGUGCCACAAACAGCAGCCCAGAGCCGAGCAGGACAAGCGAUGCGCCUCGA-------- -((((((((((.....(((((........-.)))))....((((..(((((((((......).))))))))...))))...))))))).)))(((......))).-------- ( -30.30, z-score = -1.00, R) >consensus _GUUUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUCGGUGAUGGUUGUCAGUGGCUGGUGCCACAAACAGAGCCUCAGAACCAGAACAGAUCCC________ .......((((((((((.....)))))).((((((((((...(((........)))....))))))))))....................))))................... (-12.33 = -13.41 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:19 2011