| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,704,036 – 2,704,131 |
| Length | 95 |
| Max. P | 0.526776 |
| Location | 2,704,036 – 2,704,131 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 70.40 |
| Shannon entropy | 0.56825 |
| G+C content | 0.50832 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -9.45 |
| Energy contribution | -9.20 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2704036 95 - 23011544 CAUGGCAUUCUUCGCUUUAUAUUAGCCGCAGACAUGUUGUGUCU--ACGUGGAAUCCG-----UCUAUACAAUUCCCCCGCCACGAAAGCCACCCCCCGCGU ..((((.(((...(((.......))).((((((((...))))))--....(((((..(-----(....)).)))))...))...))).)))).......... ( -18.70, z-score = -0.50, R) >droSim1.chr2L 2663870 93 - 22036055 CAUGGCAUUCUUCGCUUUAUAUUAGCCGCAGACAUGUUGUGUCU--ACGUGGAAUCCG-----UCUAUACAAUUCCCCCGCCACGAAGCCCCCCCGGCGU-- ..((((.......(((.......)))((.((((((...))))))--.)).(((((..(-----(....)).)))))...))))....(((.....)))..-- ( -20.30, z-score = -0.31, R) >droSec1.super_5 870688 98 - 5866729 CAUGGCAUUCUUCGCUUCAUAUUAGCCGCAGACAUGUUGUGUCU--ACGUGGAAUCCGUGGAAUCUAUACAAUUCUCCCGCCACGAAGCCCCCCCGCCGU-- .(((((.......(((((.......((((((((((...))))))--..)))).....((((...................)))))))))......)))))-- ( -25.13, z-score = -1.51, R) >droYak2.chr2L 2696569 78 - 22324452 CAUGGCAUUCUUCGUUUUAUAUUAGCCGCAGACAUGUUGUGUCUGCACGUGGAAUCCG-----UUCAUACAAUUCGCCUGCGA------------------- .((((.(((((.(((............((((((((...))))))))))).))))))))-----).........(((....)))------------------- ( -19.80, z-score = -0.91, R) >droEre2.scaffold_4929 2754183 76 - 26641161 CAUGGCAUUCUUCGCUUUAUAUUAGCCGCAGACAUGUUGUGUCU--ACGUGGAAUCCG-----UCUAUACAAUUCCCCAGUGA------------------- ((..(((((((.((((.......)).)).))).))))..))..(--((..(((((..(-----(....)).)))))...))).------------------- ( -14.60, z-score = -0.15, R) >droAna3.scaffold_12984 153256 85 - 754457 CAUGGCAUUCUUCGUUUUAUAUUAGCCGCAGACAUGUUGUGUCUACGU----GGCCCG-----UCUCCCCUCUCCAC-UGCUACUCCCUCUGCAC------- ..(((((.............((..(((((((((((...))))))..))----)))..)-----).............-)))))............------- ( -14.77, z-score = -0.40, R) >dp4.chr4_group4 2032183 89 - 6586962 CAUGGCAUUCUUCGUUUUAUAUUAGCCGCAGACAUGUUGUGUCUGUGCCC-CAGUCCA-----CCUACACCUCGUGCAUGCCCCUCUCUCUCUCU------- ...(((..................)))(((..((((..((((..(((...-.....))-----)..))))..))))..)))..............------- ( -17.57, z-score = -1.76, R) >droPer1.super_10 1038086 89 - 3432795 CAUGGCAUUCUUCGUUUUAUAUUAGCCGCAGACAUGUUGUGUCUGUGCCC-CAGUCCA-----CCUACACCUCGUGCAUGCCCCUCUCUCUCUCU------- ...(((..................)))(((..((((..((((..(((...-.....))-----)..))))..))))..)))..............------- ( -17.57, z-score = -1.76, R) >consensus CAUGGCAUUCUUCGCUUUAUAUUAGCCGCAGACAUGUUGUGUCU__ACGUGGAAUCCG_____UCUAUACAAUUCCCCUGCCACGAACUCCCCCC_______ ((..(((((((.((((.......)).)).))).))))..))............................................................. ( -9.45 = -9.20 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:05 2011