| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,953,207 – 8,953,299 |
| Length | 92 |
| Max. P | 0.993519 |
| Location | 8,953,207 – 8,953,299 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 64.24 |
| Shannon entropy | 0.63319 |
| G+C content | 0.50704 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -10.72 |
| Energy contribution | -12.04 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8953207 92 - 21146708 CCAUGCUCCAUCCCACUCGCACUCUCUCCA-GAGAUACA-----CAUAUAU-CCCUUUCCACCAAAAUUUAAGU-GGAUGCGGAGUGGAGAUGGAAGUGG ((((..(((((((((((((((.((((....-))))....-----.......-.....(((((..........))-)))))).)))))).)))))).)))) ( -35.40, z-score = -4.85, R) >droSim1.chr2R 12136438 92 + 19596830 GCAUGCUCUAUCCCACUUACACUCUCUCUA-GAGAUACA-----CAUACAU-CCCCUUCCACCAAAAUUAAAGU-GGAUGCGGAGUGGAGAUGGAGGUGG .(((.(((((((((((......((((....-))))....-----......(-((.(.(((((..........))-))).).))))))).)))))))))). ( -30.10, z-score = -2.82, R) >droSec1.super_1 6469358 93 - 14215200 CCAUACUCCAUCCCACUCGCACUCUCUUCAGGACAUACA-----CAUAUAU-UCCCUUCCACCGAAAUUAAAGU-GGAUGCGAAGUGGAGAUGGAAGUGG ((((..(((((((((((((((.........(((.(((..-----....)))-)))..(((((..........))-))))))).))))).)))))).)))) ( -31.50, z-score = -4.25, R) >droEre2.scaffold_4845 5724413 98 + 22589142 -CUCGCUCUAUCCCACUCGCACGCUCUCCAGGGUACUCAUGUACUAUAUAUACCCCUUCCACCGAAAUUCAAGG-GGAUGCAGAGUGGAGCUGGAAGUGG -..(((((((.((((((((((..........(((((....))))).......((((((............))))-)).))).)))))).).))).)))). ( -32.10, z-score = -1.87, R) >droPer1.super_2 3054728 78 + 9036312 ---------AUCCUA---GCCCCCACUCAGAGCCCUGUA----AUUCGCCUAAACGAAGAGGGGAGAUGCGAUUGGGAUGUGGCAUGGGGAUGG------ ---------.(((((---((((((((.((...((((...----.((((......))))..))))...)).)..))))....))).)))))....------ ( -24.80, z-score = -0.12, R) >consensus _CAUGCUCCAUCCCACUCGCACUCUCUCCA_GACAUACA_____CAUAUAU_CCCCUUCCACCGAAAUUAAAGU_GGAUGCGGAGUGGAGAUGGAAGUGG ...((((((((((((((((((.((...................................................)).))).)))))).)))))).))). (-10.72 = -12.04 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:15 2011