| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,944,055 – 8,944,145 |
| Length | 90 |
| Max. P | 0.784994 |
| Location | 8,944,055 – 8,944,145 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Shannon entropy | 0.39630 |
| G+C content | 0.47850 |
| Mean single sequence MFE | -14.01 |
| Consensus MFE | -9.30 |
| Energy contribution | -9.54 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8944055 90 - 21146708 GUGUAUUAAUUUGCCUUUCCGUUAGCCAACUCAGGCGGCAACUUAAAGUUGUCAAGCCCCCCCACAAAAAAAAAAAAC-----ACCCACAACCCC ((((....................(((......)))((((((.....)))))).......................))-----)).......... ( -15.20, z-score = -1.89, R) >droPer1.super_2 5912898 77 - 9036312 GUCUAUUAAUUUGCCAUUUUGUUAGCCAAGAAAAGAGGCAACUGAAAGUUGCCCACC-------------AGACCCCC-----CGUCCCAACCCC ((((............(((((.....)))))...(.((((((.....)))))))...-------------))))....-----............ ( -13.70, z-score = -2.26, R) >dp4.chr3 5713580 82 - 19779522 GUCUAUUAAUUUGCCAUUUUGUUAGCCAAGAAAAGAGGCAACUGAAAGUUGCCCACC-------------AGACCCCCACCAGACUCCCAACCCC ((((............(((((.....)))))...(.((((((.....)))))))...-------------...........)))).......... ( -14.10, z-score = -2.17, R) >droEre2.scaffold_4845 5715542 78 + 22589142 AUGUAUUAAUUUGCCUUUCCGUUAGCCAAGCCAGGCGGCAACUUAAAGUUGUCAAGCCCC----------AAAAAGCC-------CCACAUCCCC ((((....................(((......)))((((((.....)))))).......----------........-------..)))).... ( -12.90, z-score = -0.66, R) >droYak2.chr2R 13120680 78 + 21139217 AUGUAUUAAUUUGCCUUUGCGUUAGCCAAGCCAGGCGGCAACUUAAAGUUGUCAAGCCCC----------AAAAAGCC-------CCACAUCCCC ((((.......((.(((.((....)).))).))(((((((((.....))))))..)))..----------........-------..)))).... ( -15.20, z-score = -0.74, R) >droSec1.super_1 6460377 81 - 14215200 AUGUAUUAAUUUGCCUUUCCGUUAGCCAGCUCAGGCGACAACUUAAAGUUGUCAAGCCCC---------AAAAAAACC-----ACCCACGACCCC ...................(((..(((......)))((((((.....)))))).......---------.........-----....)))..... ( -13.90, z-score = -1.98, R) >droSim1.chr2R 7396292 81 - 19596830 AUGUAUUAAUUUGCCUUUCCGUUAGCCAACUCAGGCGGCAACUUAAAGUUGUCAAGCCCC---------GAAAAAACC-----ACCCACAACCCC ...............((((.....(((......)))((((((.....)))))).......---------)))).....-----............ ( -13.10, z-score = -0.98, R) >consensus AUGUAUUAAUUUGCCUUUCCGUUAGCCAAGUCAGGCGGCAACUUAAAGUUGUCAAGCCCC__________AAAAAACC_____ACCCACAACCCC ........................(((......)))((((((.....)))))).......................................... ( -9.30 = -9.54 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:12 2011