| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,940,076 – 8,940,172 |
| Length | 96 |
| Max. P | 0.546857 |
| Location | 8,940,076 – 8,940,172 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 65.11 |
| Shannon entropy | 0.59295 |
| G+C content | 0.49192 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -13.52 |
| Energy contribution | -13.60 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8940076 96 - 21146708 ---------UUCCGCCGCCCAAUUUUGGGGGUGGGGCCAUCGUAGUGCCGACAGCGAUGGAUUGCAAAAUCAGUCAAAAUAAAUCAAAGUGCCGCUUGCGAAUGA ---------..(((((.((((....)))))))))(((((((((.((....)).))))))(((((......)))))...............)))............ ( -31.00, z-score = -0.71, R) >droAna3.scaffold_13266 6409569 89 - 19884421 --------------UUGGUUAAAUAAUUUGGUGGGUGAGUGGUAAUGGCCAGUACUGCCAAUCAGGGAG--AACAAAAAUCAAGCUAAAAGUGGCUAGAAAAGUA --------------...(((.......((((..(...(.((((....)))).).)..))))........--))).....((.(((((....))))).))...... ( -19.76, z-score = -1.24, R) >droEre2.scaffold_4845 5711689 93 + 22589142 ------------UUGGGCCCACAUUUGUGGGUGGGGCCAGCCCAGUGUCGACAGCGAUGGAUUACAAAAUCAGUCAAAAUAAAUCAAAGAGCCGCUUGCGAGUGA ------------.........((((((..(((((((....)))............(((.((((....)))).))).................))))..)))))). ( -24.40, z-score = 0.38, R) >droSec1.super_1 6456442 88 - 14215200 -------------UUCCGCCCAAUUUGGGGGUGGGGCCAUCGCAGUGCCGACAGCGAUGGAUUGCAAAAUCAGUC-AAAUAAAUCAAA---UGACUUGCGAAUGA -------------.(((((((.......))))))).(((((((.((....)).))))))).(((((.....((((-(...........---)))))))))).... ( -29.80, z-score = -1.75, R) >droSim1.chr2R 7391746 105 - 19596830 UUCCGCCCCCCCCCCCCCCCAAAUUUGGGGGUGGGGCCAUCGCAGUGCCGACAGCGAUGGAUUGCAAAAUCAGUCAAAAUAAAUCAAAGUGCCGCUUGCGAAUGA ...(((.....((((((((((....)))))).))))(((((((.((....)).))))))).....................................)))..... ( -35.70, z-score = -1.44, R) >consensus _____________UCCGCCCAAAUUUGGGGGUGGGGCCAUCGCAGUGCCGACAGCGAUGGAUUGCAAAAUCAGUCAAAAUAAAUCAAAGAGCCGCUUGCGAAUGA .......................((((.((((((...((((((.((....)).))))))(((((......)))))................)))))).))))... (-13.52 = -13.60 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:11 2011