| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,937,419 – 8,937,520 |
| Length | 101 |
| Max. P | 0.873696 |
| Location | 8,937,419 – 8,937,520 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 94.68 |
| Shannon entropy | 0.07274 |
| G+C content | 0.36797 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -22.34 |
| Energy contribution | -22.57 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8937419 101 - 21146708 UAUCUAACAUCCUGUUUUUAAGGAAUCCAAAAUGGUCUUAAAGUGGGCUUAGAGUAACGAAAGUGUUUCGACUGUCAGAAUGACGAAAGCAUAAAAGUGUU .....(((((((...((((((((...((.....)))))))))).))((((.(((..((....))..)))...((((.....)))).))))......))))) ( -19.20, z-score = -0.44, R) >droSim1.chr2R 7388706 99 - 19596830 UAUCUAGCAUCCUGUUUUUAAGGAAUCC-AAAUGGUCUU-AAGUGGACUUAGAGAUACGAAAGUGUUUCGACUGUCAGAAUGACGAAAGCAUAAAAGUGCU ..(((..(.((((.......))))....-....((((.(-(((....))))(((((((....))))))))))))..)))........(((((....))))) ( -26.30, z-score = -2.46, R) >droSec1.super_1 6453796 99 - 14215200 UAUCUAACAUCCUGUUUUUAAGGAAUCC-AAAUGGUCUU-AAGUGGGCUCAGAGAUACGAAAGUGUUUCGACUGUCAGAAUGACGAAAGCAUAAAAGUGUU ..(((.(((((((.......))))....-...((((((.-....)))).))(((((((....)))))))...))).)))(((.(....))))......... ( -23.60, z-score = -1.59, R) >consensus UAUCUAACAUCCUGUUUUUAAGGAAUCC_AAAUGGUCUU_AAGUGGGCUUAGAGAUACGAAAGUGUUUCGACUGUCAGAAUGACGAAAGCAUAAAAGUGUU ..(((.(((((((.......)))).........(((((......)))))..(((((((....)))))))...))).)))(((.(....))))......... (-22.34 = -22.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:10 2011