| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,932,563 – 8,932,613 |
| Length | 50 |
| Max. P | 0.822394 |
| Location | 8,932,563 – 8,932,613 |
|---|---|
| Length | 50 |
| Sequences | 8 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 93.29 |
| Shannon entropy | 0.12717 |
| G+C content | 0.55500 |
| Mean single sequence MFE | -18.57 |
| Consensus MFE | -14.33 |
| Energy contribution | -14.42 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8932563 50 + 21146708 CGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCC .((.(((((((((((((((((........))))))))).))).))))))) ( -19.30, z-score = -2.46, R) >droSim1.chr2R 7383882 50 + 19596830 CGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCC .((.(((((((((((((((((........))))))))).))).))))))) ( -19.30, z-score = -2.46, R) >droSec1.super_1 6449006 50 + 14215200 CGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCC .((.(((((((((((((((((........))))))))).))).))))))) ( -19.30, z-score = -2.46, R) >droYak2.chr2R 13109020 50 - 21139217 CGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCC .((.(((((((((((((((((........))))))))).))).))))))) ( -19.30, z-score = -2.46, R) >droEre2.scaffold_4845 5701984 50 - 22589142 CGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCC .((.(((((((((((((((((........))))))))).))).))))))) ( -19.30, z-score = -2.46, R) >droAna3.scaffold_13266 6402495 50 + 19884421 CAGGCGACAUUUCCGGGCAGUCUGAAGUAAUUGCUCGGCAAGCUGUUGCC ..(((((((((((((((((((........))))))))).))).))))))) ( -23.00, z-score = -3.83, R) >droMoj3.scaffold_6496 3701020 50 + 26866924 CAGGCGACAUUUCCGGGUAGUUUGAAGUAAUUGCUUUGCAAGCUGUUGCC ..(((((((((((..(((((((......)))))))..).))).))))))) ( -15.20, z-score = -1.76, R) >droGri2.scaffold_15245 8058305 50 - 18325388 CAGGCGACAUUUCCGGGUAGUUUGAAGUAAUUGCUGUGCAAGCUGUUGCC ..((((((((((.(((((((((......))))))).)).))).))))))) ( -13.90, z-score = -1.01, R) >consensus CGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCC ....(((((((((((((((((........))))))))).))).))))).. (-14.33 = -14.42 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:10 2011