| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,929,084 – 8,929,203 |
| Length | 119 |
| Max. P | 0.964815 |
| Location | 8,929,084 – 8,929,203 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.04 |
| Shannon entropy | 0.49130 |
| G+C content | 0.44093 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -14.36 |
| Energy contribution | -15.06 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8929084 119 - 21146708 CUUCCUUCAUUUUCCUGCGACCAAAAUGUGUGCUGCCUGUACUUUU-UCAGGCGGCUUCCAUUUUGAACGGCUGAAUGCGAAGAACUUCUGUUUUGAAAAAUGUAUCUCCUUCGCAGUAC ..............((((((.(((((((...((((((((.......-.))))))))...)))))))...((..((.((((.(((((....)))))......)))))).)).))))))... ( -35.00, z-score = -3.81, R) >droSim1.chr2R 7380407 119 - 19596830 CUUCCUUCAUUUUCCUGCGGCCAAAAUGUGUGCUGCCUGUACUUUU-UCGUGCGGCUUCCAUUUUGAACGGCUGAAUGCGAAGAACUGCUGUUUUGGAAAAUGUAUCUCUUAAGCAGUAC ....((((.........((..(((((((...(((((.((.......-.)).)))))...)))))))..))((.....))))))...((((((((.(((.........))).)))))))). ( -32.30, z-score = -1.98, R) >droSec1.super_1 6445476 119 - 14215200 CUUCCUUUAUUUUCCUGCGGCCAAAAUGUGUGCUGCCUGUACUUUU-UCGUGCGGCUUCCAUUUUGAACGGCUGAAUGCGAAGAACUGCUGUUUUGGAAAAUGUAUCUCUUAAGCAGUAC ((((.............((..(((((((...(((((.((.......-.)).)))))...)))))))..))((.....))))))...((((((((.(((.........))).)))))))). ( -31.10, z-score = -1.81, R) >droYak2.chr2R 13105274 109 + 21139217 CCUCCUUCAUUUUCCUCUAGCAAAAAU--GCGCUGCCUGUACUUUU-UGCAGCGGCUUCCAUUUUGAACGGCUGAAUGCGAAGAACUUCU-UUUUGGAAAAUGUAUCUCUUCC------- .......((((((((..((((.(((((--(.(((((.((((.....-)))))))))...)))))).....)))).....((((.....))-))..))))))))..........------- ( -26.00, z-score = -1.96, R) >droEre2.scaffold_4845 5698519 101 + 22589142 CUUCCUUCAUUUUCCUACGGCCGAAAU--GUGCUGCCUGUACUUUU-UGGAGCGGCUUCCAUUUUGAACGGCUGAAUGCGAAGAACUUCU-UUUUGGGAAAUGUA--------------- .......((((((((..((((((((((--(.((((((((.......-))).)))))...)))))....)))))).....((((.....))-))..))))))))..--------------- ( -29.00, z-score = -2.32, R) >droAna3.scaffold_13266 6399374 109 - 19884421 CUUCCUUCAUUUUCUUAUGUUCCGGGCGUGCGUUGCCUGUACUUCUGUGGUCAGACUUCCAUUUUGA-------AGUACCACCAAUAUUCUGUGGAAGGAGUUUGUCGAUGAAGUC---- ....(((((((....((..(((((((((.....)))))(((((((.((((........))))...))-------)))))..(((........)))..))))..))..)))))))..---- ( -30.70, z-score = -2.01, R) >consensus CUUCCUUCAUUUUCCUGCGGCCAAAAUGUGUGCUGCCUGUACUUUU_UCGUGCGGCUUCCAUUUUGAACGGCUGAAUGCGAAGAACUUCUGUUUUGGAAAAUGUAUCUCUUAAGCA____ .......((((((((..((..(((((((...(((((...............)))))...)))))))..))((.....))................))))))))................. (-14.36 = -15.06 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:09 2011