| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,916,264 – 8,916,354 |
| Length | 90 |
| Max. P | 0.979855 |
| Location | 8,916,264 – 8,916,354 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 93.45 |
| Shannon entropy | 0.11258 |
| G+C content | 0.48171 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -22.58 |
| Energy contribution | -22.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8916264 90 + 21146708 GAGGACUACGAAAGCGAGUGAGCUGAACGGCAUGAAUAUGAAUGCCAGUCAAGCCCUUUUGGUAGCCUCGAACACGCUCACAAAUACACA ((((.((((.((...(((.(.(((((..(((((........)))))..)).))))))))).))))))))..................... ( -25.60, z-score = -2.17, R) >droEre2.scaffold_4845 5686126 86 - 22589142 UAGGACUACGAAAACGAGUGAGCUGAGCGGCAUGAAUAUGAAUGCCAGUCAAGCCCUU--GGCAGACUCGAACACGCUCACAAAUACA-- .................((((((((..((((((........)))))((((..(((...--))).)))).)..)).)))))).......-- ( -24.70, z-score = -2.51, R) >droYak2.chr2R 13092562 86 - 21139217 UAGGACUACGAAAACGAGUGAGCUGAACGGCAUGAAUUUGAAUGCCAGUCAAGCCCCU--GGUAGACUCAAACACGCUCACAAAUACC-- .................((((((((...(((((........)))))((((..(((...--))).))))....)).)))))).......-- ( -22.70, z-score = -2.61, R) >droSec1.super_1 6432559 88 + 14215200 UAGGACUACGAAAACGAGUGAGCUGAACGGCAUGAAUAUGAAUGCCAGUCAAGCCCUU--GGUAGCCUCGAACACGCUCACAAAUACACA .................(((((((((..(((((........)))))..))).(((...--)))............))))))......... ( -21.10, z-score = -1.48, R) >droSim1.chr2R 7367812 88 + 19596830 UAGGACUACGAAAACGAGUGAGCUGAACGGCAUGAAUAUGAAUGCCAGUCAAGCCCUU--GGUAGCCUCGAACACGCUCACAAAUACACA .................(((((((((..(((((........)))))..))).(((...--)))............))))))......... ( -21.10, z-score = -1.48, R) >consensus UAGGACUACGAAAACGAGUGAGCUGAACGGCAUGAAUAUGAAUGCCAGUCAAGCCCUU__GGUAGCCUCGAACACGCUCACAAAUACACA .................(((((((((..(((((........)))))..))).(((.....)))............))))))......... (-22.58 = -22.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:08 2011