| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,697,146 – 2,697,241 |
| Length | 95 |
| Max. P | 0.513760 |
| Location | 2,697,146 – 2,697,241 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.36 |
| Shannon entropy | 0.47668 |
| G+C content | 0.47756 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -16.28 |
| Energy contribution | -16.21 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2697146 95 - 23011544 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAAGUCCUUCGGGCGCCCCC----GGC-CUUGCCACG--------------- .........((((((((....)))))...)))..(((((...(((((-.((((((......))))))(.((....)))...)))----)).-...))))).--------------- ( -29.70, z-score = -1.12, R) >droSim1.chr2L 2657082 95 - 22036055 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAAGUCCUUCGGGCGCGCCC----GGC-CUUGCCACG--------------- .........((((((((....)))))...)))..(((((...(((((-(((((((......))))))((((....)).))))))----)).-...))))).--------------- ( -31.80, z-score = -1.46, R) >droSec1.super_5 863939 95 - 5866729 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAAGUCCUUCGGGCGCGCCC----GGC-CUUGCCACG--------------- .........((((((((....)))))...)))..(((((...(((((-(((((((......))))))((((....)).))))))----)).-...))))).--------------- ( -31.80, z-score = -1.46, R) >droYak2.chr2L 2688180 98 - 22324452 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAAGUCCUUCUGGCGCCCCCCAUAAAC-CUUGCCAC---------------- .........((((((((....)))))...)))..(((((.....((.-.((((((......))))))..))...(((......))).....-...)))))---------------- ( -23.10, z-score = -0.29, R) >droEre2.scaffold_4929 2747115 96 - 26641161 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGGUUUUGAUGAGCUAACGUCAAGUCCUUUUGGCGCCCCU----GGC-CUUGCCACG--------------- .........((((((((....)))))...)))..(((((.....(((.(((((((......))))))).)))...(((......----.))-)..))))).--------------- ( -25.40, z-score = -0.33, R) >droAna3.scaffold_12984 144536 99 - 754457 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGACGAGCUAACGUCAAGUACAAACUCCACCCACCACCCAC-ACUAACACC--------------- .....(((.((((((((....)))))...)))..(((((.....(((-((((((..((....))...)).))))))).....)))))..))-)........--------------- ( -22.90, z-score = -0.87, R) >dp4.chr4_group4 2025187 115 - 6586962 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAAGUCCCAUACCCCCCCAAUACCCACUUCUCCCACUCCUCCCCCCUCCAUC ((((.....((((((((....)))))...)))((((((......(((-(((((((......))))))).)))((.........))..))))))...................)))) ( -22.60, z-score = -0.93, R) >droPer1.super_10 1030401 115 - 3432795 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAAGUCCCAUACCCCCCCAAUACCCACUCCUCCCACUCCUCCCCCCUCCAUC ((((.....((((((((....)))))...))).(((((......(((-(((((((......))))))).)))((.........))..)))))....................)))) ( -21.70, z-score = -0.61, R) >droWil1.scaffold_180772 1420313 86 - 8906247 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAACCAACCCUUUCCCUGCUACU----------------------------- .........((((((((....)))))...))).((((((.....(((-(((((((......)))))...))))).......))))))----------------------------- ( -20.40, z-score = -0.97, R) >droVir3.scaffold_12963 11307017 80 - 20206255 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAGCCAUCUGCACCGCC----------------------------------- .........((((((((....)))))...)))..(((((......((-((.((((......))))))))......))))).----------------------------------- ( -19.60, z-score = -0.27, R) >droMoj3.scaffold_6500 20051203 80 - 32352404 GAUGAUGUAUGCACUUUCAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACGUCAGCCAUCUGCACCACC----------------------------------- .........(((((((......))))...)))..(((((......((-((.((((......))))))))......))))).----------------------------------- ( -17.30, z-score = 0.35, R) >droGri2.scaffold_15252 5425677 80 - 17193109 GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG-UUUGAUGAGCUAACAUCAGCCACCUGCACCAUC----------------------------------- ((((.((((((((((((....)))))...)))..((((((.....((-(((...)))))......)))))).)))).))))----------------------------------- ( -20.20, z-score = -0.81, R) >consensus GAUGAUGUAUGCACUUUGAAAAGAGUUGAGCAAAGUGGUUUUUCGGG_UUUGAUGAGCUAACGUCAAGUCCCUCCGCCGCCCCC______C_CUUGCCAC________________ ..((((((.((((((((....)))))...)))...((((((.(((.....))).)))))))))))).................................................. (-16.28 = -16.21 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:04 2011