| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,897,678 – 8,897,788 |
| Length | 110 |
| Max. P | 0.907244 |
| Location | 8,897,678 – 8,897,788 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.02 |
| Shannon entropy | 0.22159 |
| G+C content | 0.41114 |
| Mean single sequence MFE | -27.60 |
| Consensus MFE | -20.24 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8897678 110 + 21146708 AACCAAUUACUCAAAUGUCUAUCGCCUGUGG-CACACAAUCUGCCUGAUAAGUACCUGAAAAUGUUAAUACC--------CAAAGGUGUUGACGAAUUUCGCGGUAGACGG-CUAAUGCC ................(((((((((....((-((.......))))............((((.((((((((((--------....))))))))))..)))))))))))))((-(....))) ( -34.70, z-score = -4.17, R) >droSim1.chr2R 7348692 110 + 19596830 AACCAAUUAAUCAAAUGUCUAUCGCCAGUGA-CACACAAUCUGCCUGAUAAGUAACUGAAAAUGUUAAUACC--------CAAAGGUGUUGACGAAUUUCGCGGUAAACGG-CUAAUGCC ................((.((((((((((..-.((...(((.....)))..)).))))....((((((((((--------....))))))))))......)))))).))((-(....))) ( -26.70, z-score = -2.46, R) >droSec1.super_1 6413903 110 + 14215200 AAACAAUUAAUCAAAUGUCUAUCGCCAUUGA-UACACAAUUUGCCUGAUAAGUAACUGAAAAUGUUAAUACC--------CAAAGGUGUUGACGAAUUUCGCGGUAGACGG-CUAAUGCC ................(((((((((......-........((((.......))))..((((.((((((((((--------....))))))))))..)))))))))))))((-(....))) ( -30.10, z-score = -3.72, R) >droYak2.chr2R 13073460 111 - 21139217 AACCAAUUAAUCAAAUGUCUAUCGCCAGUGAACACACAAUCUUACUGAUAAGUACCUUAAAAUGUUAAUGCC--------CAAAGUCGUUGACGAAUGUCGCGGCAGACGG-CUAAUGCC ................((((..(((((((((..........))))))...............(((((((((.--------....).))))))))......)))..))))((-(....))) ( -24.00, z-score = -1.45, R) >droEre2.scaffold_4845 5667319 118 - 22589142 AACAAAUUAAUCAAAUGCCUAUCGCCAGUGA-CACACAAUCAACCCGAUAAGUACCGGAAAAUGUAAAUACCUAAAUACCCAAAGUUGUUGACGAAU-UCGCGGCAGGCGGGCUAAUGCC ...............(((((..(((..(((.-..)))..((((((((........))).....(((..........)))........))))).....-..)))..)))))(((....))) ( -22.50, z-score = -0.03, R) >consensus AACCAAUUAAUCAAAUGUCUAUCGCCAGUGA_CACACAAUCUGCCUGAUAAGUACCUGAAAAUGUUAAUACC________CAAAGGUGUUGACGAAUUUCGCGGUAGACGG_CUAAUGCC ...............((((((((((..(((....))).........................((((((((((............))))))))))......)))))))))).......... (-20.24 = -21.00 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:05 2011