| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,848,472 – 8,848,584 |
| Length | 112 |
| Max. P | 0.587697 |
| Location | 8,848,472 – 8,848,584 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.25 |
| Shannon entropy | 0.53155 |
| G+C content | 0.34258 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -10.70 |
| Energy contribution | -10.73 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8848472 112 + 21146708 -CUUGCUGUAUAAUUUGAAAUUCAAAACUUUCAAAAUGGAAAAACUUCAAAACUCAAAUCUUUGAAGUGCAGGCUACCUCAGACUUUCGGCCUGAUGAAGUUCGGGUUAUAGA -.......(((((((((((.((((....((((......)))).((((((((.........)))))))).((((((.............)))))).)))).))))))))))).. ( -26.02, z-score = -1.86, R) >droAna3.scaffold_13266 6318380 108 + 19884421 GAAAUUAACUUUUUGCAUAUUUUAAAAGUUUU----UUGGAUAUUUUUUGAAUAUAUAUUUUUGGGGCGAGGAGGUUCUGCUG-UAUAGGCUUAGCAAAGUUCAAGUUAUGGA (((.....((((((((....(((((((((..(----(..((.....))..)).....)))))))))))))))))(((..(((.-....)))..)))....))).......... ( -17.40, z-score = 0.32, R) >droEre2.scaffold_4845 5615067 109 - 22589142 -UUUCUUGUAUAAUUUGAAUUUGAAAACUUUCAAAAUGGAAAAACUUCAGAACCCAAAUCUUUGAAGUGCA-CAUUUCA--GGCCAUCGAGCUGAUAAAGUUCGGGUUAUAGA -(((((.......((((((..(....)..))))))..)))))..((....(((((.....((((((((...-.))))))--)).....(((((.....))))))))))..)). ( -21.90, z-score = -0.75, R) >droYak2.chr2R 13019422 106 - 21139217 -CUUCUCUUAUAAUUUGAAUUUGAAAACUUUCAAAUUGGAACAACUUCAGAACCCAAAUCUUUGAAGUGCAGCCUACCU--UACCUUCG----GAUAAAGUUCGGGUUAUAUA -.......((((((((((((((...............((....((((((((.........))))))))....))..((.--.......)----)...)))))))))))))).. ( -20.90, z-score = -1.63, R) >droSec1.super_1 6364285 112 + 14215200 -CUUGCUGCAUAAUUUGAAAUUCAAAACUUUCCAAAUGGAAAAACUUCAAAACUCGAAUCUUUGAAGUGCAGGCUACCUCAGACUUUCGACCUGAUAAAGUUCGGGUUAUAGA -....((((....((((.....))))..(((((....))))).((((((((.........))))))))))))...........((...(((((((......)))))))..)). ( -26.10, z-score = -2.17, R) >droSim1.chr2R_random 2265341 112 + 2996586 -CUUGCUGCAUAAUUUGAAAUUCAAAACUUUCCAAAUGGAAAAACUUCAAAACUCGAAUCUUUGAAGUGCAGGCUACCUCAGACUUUCGACCUGAUAAAGUUCGGGUUAUAGA -....((((....((((.....))))..(((((....))))).((((((((.........))))))))))))...........((...(((((((......)))))))..)). ( -26.10, z-score = -2.17, R) >consensus _CUUGCUGCAUAAUUUGAAAUUCAAAACUUUCAAAAUGGAAAAACUUCAAAACUCAAAUCUUUGAAGUGCAGGCUACCUCAGACUUUCGACCUGAUAAAGUUCGGGUUAUAGA .....((((....................(((......)))..((((((((.........))))))))))))................(((((((......)))))))..... (-10.70 = -10.73 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:03 2011