| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,812,741 – 8,812,824 |
| Length | 83 |
| Max. P | 0.906477 |
| Location | 8,812,741 – 8,812,824 |
|---|---|
| Length | 83 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 76.83 |
| Shannon entropy | 0.38373 |
| G+C content | 0.36281 |
| Mean single sequence MFE | -22.33 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.77 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8812741 83 - 21146708 AUUAUAAUUGGGAACUCAUGCAGGAAGUGACAUCAACUUUUUGCUCGUGGGUAAUUAGUAAAGUUGAGAGUUCCUAUAGUCAG------------- ........(((((((((..(((((((((.......))))))))).......(((((.....))))).))))))))).......------------- ( -23.10, z-score = -2.69, R) >droYak2.chr2R 12981932 96 + 21139217 AUUAUAAUUGGGCACACGUGCAGGAAGUGACUUCAACUUUUUGUUCGUGAGUAAAUAGCAAAGUUGAGAAUUCCUAUAGCUUCGUUUUAAAAGCAG ...........((.((((.(((((((((.......))))))))).)))).......(((.((((((((.....)).)))))).)))......)).. ( -21.70, z-score = -1.12, R) >droSec1.super_1 6328349 96 - 14215200 AUUAUAAUUGGGAACUCAUGCAGGAAGUGACAUUAACUUUUUGCUUGUGGGUAAUUAGCAAAGUUGAGAAUUCCUAUAACUUUAUUUCGAAAGAAG ........((((((((((((((((((((.......)))))))))..))))))..(((((...)))))....))))).........(((....))). ( -23.80, z-score = -2.60, R) >droSim1.chr2R 7272292 82 - 19596830 AUUAUAAUUGGGAACUCAUGCAGGAAGUGACAUCAACUUUUUGCUCGUGG------------GUUGAGAAUUCCUAUAGCUUCA--UCGAAAGAAG ........((((((((((((((((((((.......)))))))))..))))------------)).......)))))........--((....)).. ( -20.71, z-score = -1.66, R) >consensus AUUAUAAUUGGGAACUCAUGCAGGAAGUGACAUCAACUUUUUGCUCGUGGGUAAUUAGCAAAGUUGAGAAUUCCUAUAGCUUCA__UCGAAAGAAG ........((((((((((.(((((((((.......)))))))))....................))))..)))))).................... (-13.65 = -13.77 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:02 2011