| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,801,912 – 8,801,962 |
| Length | 50 |
| Max. P | 0.993711 |
| Location | 8,801,912 – 8,801,962 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.40 |
| Shannon entropy | 0.02888 |
| G+C content | 0.44400 |
| Mean single sequence MFE | -15.14 |
| Consensus MFE | -14.80 |
| Energy contribution | -14.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.64 |
| SVM RNA-class probability | 0.993711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8801912 50 - 21146708 AUAGCUAUAUAGUCCCGUAGUCGGGUUUAUGUGCAGGACCUAGUCCAAAG ...((.((((((.((((....)))).)))))))).((((...)))).... ( -16.90, z-score = -3.58, R) >droSim1.chr2R 7261277 50 - 19596830 AUAGCUAUAUAGUCCCAUAGUCGGGUUUAUGUGCAGGACCUAGUCCAAAG ...((.((((((.(((......))).)))))))).((((...)))).... ( -14.70, z-score = -2.69, R) >droSec1.super_1 6317690 50 - 14215200 AUAGCUAUAUAGUCCCAUAGUCGGGUUUAUGUGCAGGACCUAGUCCAAAG ...((.((((((.(((......))).)))))))).((((...)))).... ( -14.70, z-score = -2.69, R) >droYak2.chr2R 12970740 50 + 21139217 AUAGCUAUAUAGUCCCAUAGUCGGGUUUAUGUGCAGGACCUAGUCCAAAG ...((.((((((.(((......))).)))))))).((((...)))).... ( -14.70, z-score = -2.69, R) >droEre2.scaffold_4845 5566537 50 + 22589142 AUAGCUAUAUAGUCCCAUUGUCGGGUUUAUGUGCAGGACCUAGUCCAAAG ...((.((((((.(((......))).)))))))).((((...)))).... ( -14.70, z-score = -2.60, R) >consensus AUAGCUAUAUAGUCCCAUAGUCGGGUUUAUGUGCAGGACCUAGUCCAAAG ...((.((((((.(((......))).)))))))).((((...)))).... (-14.80 = -14.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:57 2011