| Sequence ID | dm3.chr2L |
|---|---|
| Location | 327,175 – 327,265 |
| Length | 90 |
| Max. P | 0.887067 |
| Location | 327,175 – 327,265 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.47 |
| Shannon entropy | 0.20100 |
| G+C content | 0.40057 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.18 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 327175 90 - 23011544 AAUGAUU-------CCUUGCCAAAGGGUUUUUCGUUUCGAGACAGACAGCUUUUCUCAUUAAUUCUGAUAAAGCUGUUUCGUUGGCAACAACACAAA (((((.(-------((((....)))))....))))).......((((((((((..(((.......))).)))))))))).((((....))))..... ( -23.70, z-score = -2.57, R) >droSim1.chr2L 346970 90 - 22036055 AAUGAUU-------CCUUGCCAAAGGGUUUUUCGUUUCGAGGAAGACAGCUUUUCUCAUUAAUUCUGAUAAAGCUGUUUCGUUGGCAACAACACAAG .....((-------(((((..(((.((....)).))))))))))(((((((((..(((.......))).)))))))))..((((....))))..... ( -25.60, z-score = -2.90, R) >droSec1.super_14 324694 90 - 2068291 AAUGAUU-------CCUUGCCAAAGGGUUUUUCGUUUCGAGGAAGACAGUUUUUCUCAUUAAUUCUGAAAAAGCUGUUUCGUUGGCAACAACACAAG .....((-------(((((..(((.((....)).))))))))))((((((((((.(((.......)))))))))))))..((((....))))..... ( -24.40, z-score = -2.40, R) >droYak2.chr2L 323393 90 - 22324452 AAUGAUU-------CCUUGCCAAAGGGUUUUUCGUUUCGAGGAAAACGGCUUUUCCCAUUAAUUCUGACAACGCUGUUUCGUUGGCAACAACGCAAA .....((-------(((((..(((.((....)).))))))))))((((((((.((...........)).)).)))))).(((((....))))).... ( -19.90, z-score = -0.24, R) >droEre2.scaffold_4929 382467 94 - 26641161 AAUGAUUCCUUGCCCCUUGCCAAAGGGUUUUCCCUUUCGAGGAAGGCAGCUUUUCUCAUUAAUUCUGGUAAAGCAGUUUCGUUGGCAACAACAU--- ...((..(..(((((((((..((((((....)))))))))))..))))(((((.(.((.......))).))))).)..))((((....))))..--- ( -28.80, z-score = -2.35, R) >consensus AAUGAUU_______CCUUGCCAAAGGGUUUUUCGUUUCGAGGAAGACAGCUUUUCUCAUUAAUUCUGAUAAAGCUGUUUCGUUGGCAACAACACAAA ..............(((((..(((.((....)).)))))))).((((((((((((...........)).)))))))))).((((....))))..... (-19.50 = -19.18 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:30 2011