| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,795,770 – 8,795,875 |
| Length | 105 |
| Max. P | 0.904068 |
| Location | 8,795,770 – 8,795,875 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.28 |
| Shannon entropy | 0.51153 |
| G+C content | 0.50652 |
| Mean single sequence MFE | -33.00 |
| Consensus MFE | -18.89 |
| Energy contribution | -19.37 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8795770 105 - 21146708 ----------CGAAUCAAUAUCGAGACAUUUUCGCGCCGUGCAAAAGCACUCCGUCUUAAGUAGGCACUUCUCACCUAACGAGUGCCAUGAGGAUU-GGUCCGGAGUUGUCGGGUU ----------(((.......))).((((.(((((.(((((((....))))...(((((.....(((((((..........)))))))...))))).-))).))))).))))..... ( -31.40, z-score = -1.06, R) >droAna3.scaffold_13266 6262863 94 - 19884421 -------CUAUCAAUAACUAACCCCCUCUUUUUUCUCCGUGCAUAAAUAUGCCGCCAUAAGCAGGCCCUU---AUGUUAAGAGUGCC-UACGGGUGUAUGGAGGA----------- -------.........................((((((((((...((((((..(((.......)))...)---)))))......(((-....)))))))))))))----------- ( -23.80, z-score = -0.92, R) >droEre2.scaffold_4845 5560247 116 + 22589142 GGAAUCAGUAUAUAUGUACAUAGGCACAUUUUCGCGCCGUGCAGGAGCACUCCGUCUUAAGUAGGCACUUCUCACCUCAGGAGUGCCACGAGGAUUCGGGCAGGAGUCGCCGGUUU .(((((.((((....))))...(((........((.((.....)).))((((((((.......(((((((((......))))))))).((......))))).))))).)))))))) ( -40.10, z-score = -2.31, R) >droYak2.chr2R 12964307 107 + 21139217 --------GAAAUAAGUAUACAGAUACAUUUUCGCUCCGUGCAGGAGCACUCCGUCUUAAGUAGGCACUUCUCACCUCAGGAGUGCCACGAGGAUU-GGGCGGGAGUCGUCGGGUU --------((((...((((....))))..))))(((((.....)))))(((((((((...((.(((((((((......))))))))))).......-)))).)))))......... ( -37.40, z-score = -2.23, R) >droSec1.super_1 6311679 105 - 14215200 ----------CGAAUCUAUAUCGAGACAUUUUCGCGCCGUGCAAAAGCACUCCGUCUUAAGUAGGCACUUCUCACCUCACGAGUGCCAUGAGGAUU-GGUCCGGAGUUGUCGGGUU ----------(((.......))).((((.(((((.(((((((....))))...(((((.....(((((((..........)))))))...))))).-))).))))).))))..... ( -31.40, z-score = -0.82, R) >droSim1.chr2R 7256161 105 - 19596830 ----------CGAAUCAAUAUCGAGACAUUUUCGCGCCGUGCAAAAGCACUCCGUCUUAAGUAGGCACUUCUCACCUCAGGAGUGCCAUGAGGAUU-GGUCCGGAGUUGUUGGGUU ----------.........(((..((((.(((((.(((((((....))))...(((((.....(((((((((......)))))))))...))))).-))).))))).)))).))). ( -33.90, z-score = -1.65, R) >consensus __________CGAAUCAAUAUCGAGACAUUUUCGCGCCGUGCAAAAGCACUCCGUCUUAAGUAGGCACUUCUCACCUCAGGAGUGCCAUGAGGAUU_GGGCCGGAGUUGUCGGGUU .............................(((((.(((((((....))))...(((((.....(((((((..........)))))))...)))))..))).))))).......... (-18.89 = -19.37 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:54 2011