| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,781,529 – 8,781,654 |
| Length | 125 |
| Max. P | 0.888048 |
| Location | 8,781,529 – 8,781,654 |
|---|---|
| Length | 125 |
| Sequences | 12 |
| Columns | 131 |
| Reading direction | reverse |
| Mean pairwise identity | 94.08 |
| Shannon entropy | 0.13300 |
| G+C content | 0.37218 |
| Mean single sequence MFE | -29.09 |
| Consensus MFE | -26.54 |
| Energy contribution | -26.36 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8781529 125 - 21146708 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGUUUUAUUGUGCGCC .(((....(.....)(((..(.....------(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..)))))) ( -29.10, z-score = -1.68, R) >droPer1.super_4 4352142 125 + 7162766 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUAUGCUUUAUUGUGCGCC .(((...((((..(((((((......------(((((...((((((((......))))))))....)))))...((....)).....(((((.((.....)).))))).....)))))))..))))..))) ( -30.20, z-score = -2.01, R) >dp4.chr3 14803984 125 - 19779522 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUAUGCUUUAUUGUGCGCC .(((...((((..(((((((......------(((((...((((((((......))))))))....)))))...((....)).....(((((.((.....)).))))).....)))))))..))))..))) ( -30.20, z-score = -2.01, R) >droAna3.scaffold_13266 6248576 125 - 19884421 AGGCAAAGCAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGUUUUAUUGUGCGCC .(((...(....)..(((..(.....------(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..)))))) ( -28.80, z-score = -1.25, R) >droEre2.scaffold_4845 5545518 125 + 22589142 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUAUUUUAUUGUGCGCC .(((...((((....((.((......------(((((...((((((((......))))))))....)))))...((....)).)).))(((((.(((((....)))))...)))))......))))..))) ( -26.00, z-score = -1.15, R) >droYak2.chr2R 12949182 125 + 21139217 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGUUUUAUUGUGCGCC .(((....(.....)(((..(.....------(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..)))))) ( -29.10, z-score = -1.68, R) >droSec1.super_1 6297695 125 - 14215200 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGUUUUAUUGUGCGCC .(((....(.....)(((..(.....------(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..)))))) ( -29.10, z-score = -1.68, R) >droSim1.chr2R 7241468 125 - 19596830 AGGCAAAACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGUUUUAUUGUGCGCC .(((....(.....)(((..(.....------(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..)))))) ( -29.10, z-score = -1.68, R) >droVir3.scaffold_12875 7309997 130 + 20611582 -GAGCAGAGCGACAGGCAUGAACAAACAUGAACAAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAACCGAGUGGCAAGUGGCAACUUGAUUUAUUUGGUUUAUUGUGCGAC -.......((.((((.((((......))))..(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..))))))... ( -30.50, z-score = -1.98, R) >droMoj3.scaffold_6496 6270655 125 + 26866924 AGGGAACGGGGACAAGCAUGAACAAA------CAAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGGUUUAUUGUGCGAC .(....)(....)..(((..(.....------(((((...((((((((......))))))))....)))))((((((((.(((....(((((.((.....)).))))).))).)))))))).)..)))... ( -28.60, z-score = -2.38, R) >droGri2.scaffold_15245 7050147 123 - 18325388 GGGAGAGUGCGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAACCGAGUGGCAAGUGGCAACUUGAUUUAUUCGGUUUAUUGUGCG-- ...............(((..(.....------(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..))).-- ( -31.60, z-score = -2.20, R) >droWil1.scaffold_180697 3034977 124 + 4168966 AAGAUAGACAGACAGGCAUGAACAAA------CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGGUUUAUUGUGUGC- ............((.((((((((...------(((((...((((((((......))))))))....)))))...((....)).....((((((.(((((....)))))...))))))))))).))).)).- ( -26.80, z-score = -1.50, R) >consensus AGGCAAAACAGACAGGCAUGAACAAA______CGAAACGUUUAUCUUCAUUAAAGGAGGUAAUUAAUUUUGAAAUCGAAAGAACAAGCGAGUGGCAAGUGGCAACUUGAUUUAUUUGUUUUAUUGUGCGCC ...............(((..(...........(((((...((((((((......))))))))....)))))...((....))..(((((((((.(((((....)))))...)))))))))..)..)))... (-26.54 = -26.36 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:52 2011