| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,766,534 – 8,766,597 |
| Length | 63 |
| Max. P | 0.847133 |
| Location | 8,766,534 – 8,766,597 |
|---|---|
| Length | 63 |
| Sequences | 12 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 76.86 |
| Shannon entropy | 0.49101 |
| G+C content | 0.39011 |
| Mean single sequence MFE | -11.94 |
| Consensus MFE | -9.04 |
| Energy contribution | -8.61 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8766534 63 + 21146708 ----UUAGAAGUUAAGA-AGAUUGAACCUUGGUAUUGGGGAUACUGGGGAACACUUUGCCAGGACAUU ----......(((..((-((..((..(((..(((((...)))))..)))..)))))).....)))... ( -12.70, z-score = -0.79, R) >droPer1.super_4 4337630 66 - 7162766 --UAAAAAAUUUGCAAUUAAAAUAGACCUUGGUACUGGGGAUAUUGAGGGACACUUUGCCACGACAUU --..........((((..........(((..((((....).)))..)))......))))......... ( -8.89, z-score = -0.04, R) >dp4.chr3 14789500 66 + 19779522 --UAAAAAAUUUGCAAUUAAAAUAGACCUUGGUACUGGGGAUAUUGAGGGACACUUUGCCACGACAUU --..........((((..........(((..((((....).)))..)))......))))......... ( -8.89, z-score = -0.04, R) >droAna3.scaffold_13266 6233998 63 + 19884421 AUUAAAAAA-----AACUUAAAUAAACCUUGGUACUGGGGGUACUGGGGGACACUCUGCCAGGACAUU .........-----............((((......))))((.((((.((.....)).)))).))... ( -12.90, z-score = -0.44, R) >droEre2.scaffold_4845 5530156 63 - 22589142 ----UUAGAAGUUAAGA-AGAUUGAACCUUGGUAUUGGGGAUACUGGGGAACACUUUGCCAGGACAUU ----......(((..((-((..((..(((..(((((...)))))..)))..)))))).....)))... ( -12.70, z-score = -0.79, R) >droYak2.chr2R 12933782 63 - 21139217 ----UUAGAAGUUAAGA-AGAUUGAACCUUGGUAUUGGGGAUACUGGGGAACACUUUGCCAGGACAUU ----......(((..((-((..((..(((..(((((...)))))..)))..)))))).....)))... ( -12.70, z-score = -0.79, R) >droSec1.super_1 6282281 63 + 14215200 ----UUAGAAGUUAAGA-AGAUUGCACCUUGGUAUUGGGGAUACUGGGGAACACUUUGCCAGGACAUU ----......(((..((-((..((..(((..(((((...)))))..)))..)))))).....)))... ( -13.00, z-score = -0.68, R) >droSim1.chr2R 7226433 63 + 19596830 ----UUAGAAGUUAAGA-AGAUUGAACCUUGGUAUUGGGGAUACUGGGGAACACUUUGCCAGGACAUU ----......(((..((-((..((..(((..(((((...)))))..)))..)))))).....)))... ( -12.70, z-score = -0.79, R) >droVir3.scaffold_12875 7290833 64 - 20611582 ----GUAAAAGUAAAAUUAAGUUAAACCUUGGUAUUGAGGAUAUUGAGGGACACUUUGCCACGACAUU ----......((......((((....(((..(((((...)))))..)))...)))).......))... ( -11.32, z-score = -1.01, R) >droMoj3.scaffold_6496 6251892 64 - 26866924 ----AAAAAAGGCAAAAUAAAUUAAACCUUGAUAUUGAGGAUAUUGUGGAACGCUUUGCCACGACAUU ----......((((((..........((((......)))).....(((...)))))))))........ ( -11.30, z-score = -1.79, R) >droGri2.scaffold_15245 7032616 64 + 18325388 ----UGAAAAGUCAAUAUAAAGUAAACCUUGGUAUUGAGGAUAUUGGGGGACACUUUGCCACGACAUU ----......(((....((((((...(((..(((((...)))))..)))...))))))....)))... ( -16.20, z-score = -2.43, R) >droWil1.scaffold_180697 3014088 53 - 4168966 ---------------AGAAACAGAAACCUUGAUAUUGUGGAUAUUGGGGGACACUUUGCCACGACAUU ---------------...............(((.((((((......(....)......)))))).))) ( -10.00, z-score = -1.20, R) >consensus ____UUAAAAGUUAAAAUAAAUUAAACCUUGGUAUUGGGGAUACUGGGGAACACUUUGCCACGACAUU ..........................(((..(((((...)))))..)))................... ( -9.04 = -8.61 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:51 2011