| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,758,698 – 8,758,792 |
| Length | 94 |
| Max. P | 0.640591 |
| Location | 8,758,698 – 8,758,792 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 98.94 |
| Shannon entropy | 0.01801 |
| G+C content | 0.33974 |
| Mean single sequence MFE | -18.96 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.06 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8758698 94 - 21146708 UAAGAUUGAAGGGUUCCCUUAGUAUGUUAAGUAUAGUUAUUAUGCUUAUGUGUUCUGUUCAGCGCUCACUCGGAUGCCUUUAUUUUUGUAUUUU (((((.((((((..(((...(((....(((((((((...))))))))).(((((......)))))..))).)))..)))))).)))))...... ( -19.90, z-score = -1.47, R) >droSim1.chr2R 7217279 93 - 19596830 UAAGAUUGAAGGGUUCCCUUAGUAUGUUAAGU-UAGUUAUUAUGCUUAUGUGUUCUGUUCAGCGCUCACUAGGAUGCCUUUAUUUUUGUAUUUU (((((.((((((..(((..((((....(((((-..........))))).(((((......)))))..)))))))..)))))).)))))...... ( -17.80, z-score = -0.62, R) >droSec1.super_1 6274464 93 - 14215200 UAAGAUUGAAGGGUUCCCUUAGUAUGUUAAGU-UAGUUAUUAUGCUUAUGUGUUCUGUUCAGCGCUCACUCGGAUGCCUUUAUUUUUGUAUUUU (((((.((((((..(((...((((((.(((..-...))).))))))...(((((......)))))......)))..)))))).)))))...... ( -17.30, z-score = -0.62, R) >droYak2.chr2R 12925988 94 + 21139217 UAAGAUUGAAGGGUUCCCUUAGUAUGUUAAGUAUAGUUAUUAUGCUUAUGUGUUCUGUUCAGCGCUCACUCGGAUGCCUUUAUUUUUGUAUUUU (((((.((((((..(((...(((....(((((((((...))))))))).(((((......)))))..))).)))..)))))).)))))...... ( -19.90, z-score = -1.47, R) >droEre2.scaffold_4845 5522300 94 + 22589142 UAAGAUUGAAGGGUUCCCUUAGUAUGUUAAGUAUAGUUAUUAUGCUUAUGUGUUCUGUUCAGCGCUCACUCGGAUGCCUUUAUUUUUGUAUUUU (((((.((((((..(((...(((....(((((((((...))))))))).(((((......)))))..))).)))..)))))).)))))...... ( -19.90, z-score = -1.47, R) >consensus UAAGAUUGAAGGGUUCCCUUAGUAUGUUAAGUAUAGUUAUUAUGCUUAUGUGUUCUGUUCAGCGCUCACUCGGAUGCCUUUAUUUUUGUAUUUU (((((.((((((..(((...(((....(((((((((...))))))))).(((((......)))))..))).)))..)))))).)))))...... (-18.66 = -19.06 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:50 2011