| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,748,472 – 8,748,568 |
| Length | 96 |
| Max. P | 0.778975 |
| Location | 8,748,472 – 8,748,568 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 64.91 |
| Shannon entropy | 0.56948 |
| G+C content | 0.27245 |
| Mean single sequence MFE | -17.12 |
| Consensus MFE | -10.48 |
| Energy contribution | -9.35 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.63 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8748472 96 - 21146708 AGUGCGGCUUAGUGAGUAAAGAUUAUUCUAAUCAAAUUUUUAAGCGAAUGG--UUGUAUUUACCUUUUGUAUAUUAUGCGUAUGAGUAAUUAUUUAAA .((((((((...((..((((((((..........))))))))..))...))--))))))(((((...(((((...)))))...).))))......... ( -15.30, z-score = 0.10, R) >droSim1.chr2R 7211825 98 - 19596830 AGUACGACUCAGUGAGUAAAGAUUGUCCUUAUCAAAUUUUUAAGCGAAUGGUAUUGUAUUUACCAUUUGCAUAUUAUGAGUAUGAGUAAUUAUUUAAA ..(((.(((((.....((((((((..........)))))))).((((((((((.......))))))))))......)))))....))).......... ( -23.50, z-score = -3.29, R) >droSec1.super_1 6269050 98 - 14215200 AGUGCGACUCAGUGAGUAAAGAUUAUCCUUAUCAAAUUUUUAAGCGAAUGGUAUUGUAUUUACCAUGUGCAUAUUAUGAGUAUGAGUAAUUAUUUAAA ..(((.(((((...((((..(((.......)))..........(((.((((((.......)))))).))).)))).)))))....))).......... ( -18.90, z-score = -1.26, R) >triCas2.chrUn_35 54056 97 + 346786 UUCUUUGUGUACUGACUAAAUUUAAAUUUAGAUUAUAUGCUAAUUUUGUAUU-UUGCGCCUGGUUUAAUAAAAUGUUUUGUAAAAAUAGUGGCAUCGA ......(((((.(((((((((....)))))).))))))))............-....(((..((((.(((((....)))))..))))...)))..... ( -10.80, z-score = 1.21, R) >consensus AGUGCGACUCAGUGAGUAAAGAUUAUCCUAAUCAAAUUUUUAAGCGAAUGGU_UUGUAUUUACCAUUUGCAUAUUAUGAGUAUGAGUAAUUAUUUAAA ((((..(((((.....((((((((..........)))))))).((((((((((.......))))))))))............)))))...)))).... (-10.48 = -9.35 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:49 2011