| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,745,512 – 8,745,602 |
| Length | 90 |
| Max. P | 0.753108 |
| Location | 8,745,512 – 8,745,602 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 85.44 |
| Shannon entropy | 0.19173 |
| G+C content | 0.44042 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -18.13 |
| Energy contribution | -18.47 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8745512 90 - 21146708 -UCGGGGAUCACCCGUUUGUGGCGAUAACGCGGCCGUCCAAUGGGUUUCCAAUAUCUCCCAUUUACACAAAAAAAAAAAAAAAACACAAAA -.((((.....))))(((((((((....)))....((..((((((............)))))).))..................)))))). ( -21.40, z-score = -1.22, R) >droSim1.chr2R 7208910 80 - 19596830 UUCGGGGAUCUCCCGUUUGUGGCGAUAACGCGA----CCAAUGGGUUUCCAAUAUCGCCCAUUUACACAAAAAAAAACACAAAA------- ..((((.....))))(((((((((....)))..----..(((((((..........)))))))..)))))).............------- ( -20.90, z-score = -1.69, R) >droSec1.super_1 6266163 78 - 14215200 -UCGGGGAUCUCCCGCUUGUGGCGAUAACGCGA----CCAAUGGGUUUCCAAUAUCGCCCAUUUACAC-AAAAAAAACACAAAA------- -.((((.....)))).((((((((....)))..----..(((((((..........)))))))..)))-)).............------- ( -19.70, z-score = -1.47, R) >consensus _UCGGGGAUCUCCCGUUUGUGGCGAUAACGCGA____CCAAUGGGUUUCCAAUAUCGCCCAUUUACACAAAAAAAAACACAAAA_______ ..((((.....)))).((((((((....)))........((((((............))))))..)))))..................... (-18.13 = -18.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:48 2011