| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,670,236 – 8,670,290 |
| Length | 54 |
| Max. P | 0.975376 |
| Location | 8,670,236 – 8,670,290 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.05809 |
| G+C content | 0.48889 |
| Mean single sequence MFE | -17.16 |
| Consensus MFE | -17.16 |
| Energy contribution | -17.00 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.96 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8670236 54 + 21146708 GCUCAGUCGGGCAACAUCAUUAUCUGAUUGAGCUGAAUAGCGUGUUGGGCAGGU ((((((((((..((.....))..))))))))))......((.((.....)).)) ( -17.10, z-score = -1.71, R) >droSim1.chr2R 7149970 54 + 19596830 GCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCUGAAUAGCGUGUUGGGCAGGU (((((((((((.((.....)).)))))))))))......((.((.....)).)) ( -17.20, z-score = -2.01, R) >droSec1.super_1 6210980 54 + 14215200 GCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCUGAAUAGCGUGUUGGGCAGGU (((((((((((.((.....)).)))))))))))......((.((.....)).)) ( -17.20, z-score = -2.01, R) >droYak2.chr2R 12859668 54 - 21139217 GCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCAGAAUAGCGUGUUGGCCAGGU (((((((((((.((.....)).)))))))))))......((.((.....)).)) ( -16.50, z-score = -1.92, R) >droEre2.scaffold_4845 5450629 54 - 22589142 GCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCAGAAUGGCGUGUUGGGCAGGU (((((((((((.((.....)).)))))))))))......((.((.....)).)) ( -17.80, z-score = -2.17, R) >consensus GCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCUGAAUAGCGUGUUGGGCAGGU (((((((((((.((.....)).)))))))))))......((.((.....)).)) (-17.16 = -17.00 + -0.16)
| Location | 8,670,236 – 8,670,290 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.05809 |
| G+C content | 0.48889 |
| Mean single sequence MFE | -11.06 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8670236 54 - 21146708 ACCUGCCCAACACGCUAUUCAGCUCAAUCAGAUAAUGAUGUUGCCCGACUGAGC .....................(((((((((.....))))(((....)))))))) ( -7.90, z-score = -0.26, R) >droSim1.chr2R 7149970 54 - 19596830 ACCUGCCCAACACGCUAUUCAGCUCAAUCAGAUAAUGAUGUUGUCCGACUGAGC .....................(((((.((.((((((...)))))).)).))))) ( -11.40, z-score = -1.57, R) >droSec1.super_1 6210980 54 - 14215200 ACCUGCCCAACACGCUAUUCAGCUCAAUCAGAUAAUGAUGUUGUCCGACUGAGC .....................(((((.((.((((((...)))))).)).))))) ( -11.40, z-score = -1.57, R) >droYak2.chr2R 12859668 54 + 21139217 ACCUGGCCAACACGCUAUUCUGCUCAAUCAGAUAAUGAUGUUGUCCGACUGAGC ...((((......))))....(((((.((.((((((...)))))).)).))))) ( -13.40, z-score = -1.85, R) >droEre2.scaffold_4845 5450629 54 + 22589142 ACCUGCCCAACACGCCAUUCUGCUCAAUCAGAUAAUGAUGUUGUCCGACUGAGC .....................(((((.((.((((((...)))))).)).))))) ( -11.20, z-score = -1.56, R) >consensus ACCUGCCCAACACGCUAUUCAGCUCAAUCAGAUAAUGAUGUUGUCCGACUGAGC .....................(((((.((.((((((...)))))).)).))))) (-10.36 = -10.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:42 2011