Locus 3886

Sequence ID dm3.chr2R
Location 8,669,972 – 8,670,070
Length 98
Max. P 0.852837
window5327

overview

Window 7

Location 8,669,972 – 8,670,070
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 81.74
Shannon entropy 0.30059
G+C content 0.49347
Mean single sequence MFE -29.46
Consensus MFE -16.30
Energy contribution -17.14
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -2.52
Structure conservation index 0.55
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.92
SVM RNA-class probability 0.852837
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 8669972 98 - 21146708
GGAGUUGGUAGCUCCAUCCCCAGCUCCAGCACACCAUCUCCACGGACAAGUCCCUUUUGCAAAACACACUCCUCAUAUGUAUAUGGAGUGUAUAAACA
((((.((((((((........)))).......)))).))))..(((....)))............(((((((............)))))))....... ( -25.41, z-score =  -2.32, R)
>droSim1.chr2R 7149703 96 - 19596830
GGAGUUGGGAGCUCCAGCCCCAGCUCCAG--CUCCAUCUCCAUGGACAAGUCCCUUCUGCAAGGCACACUCCUCAUAUGUAUAUGGAGUGUAUAAACA
(((((((((.((....))))))))))).(--((((((...((((((..(((.((((....))))...)))..)).))))...)))))))......... ( -36.20, z-score =  -3.30, R)
>droSec1.super_1 6210713 90 - 14215200
GGAGUUGCGAGUUCCAGCCCCAGC--------UCCAUCUCCAUGGACAAGUCCCUUCUGCAAAGCACACUCCUCAUAUGUAUAUGGAGUGUAUAAACA
((((.((.(((((........)))--------)))).))))..(((....)))............(((((((............)))))))....... ( -24.70, z-score =  -2.07, R)
>droYak2.chr2R 12859401 91 + 21139217
GGAGUUGGGAGCUGGGUGCUCCAU-------CUCUUCCGCCACGGACAAGUCCCUACUGCUAAACACACUCCUCAUAUGUAUAUGGAGUGUAUAAACA
(((.((((((((.....)))))..-------....((((...))))))).)))............(((((((............)))))))....... ( -29.10, z-score =  -1.82, R)
>droEre2.scaffold_4845 5450372 91 + 22589142
GGAGUUGGCAGUUGGGAGCUCCAU-------CUCGUCCUCCACGGACAAGUCCCUACUGCUAAACACACUCCUCAUAUGUAUAUGGAGUGUAUAAACA
....((((((((.((((.......-------((.((((.....)))).)))))).))))))))..(((((((............)))))))....... ( -31.91, z-score =  -3.10, R)
>consensus
GGAGUUGGGAGCUCCAGCCCCAGC_______CUCCAUCUCCACGGACAAGUCCCUUCUGCAAAACACACUCCUCAUAUGUAUAUGGAGUGUAUAAACA
((((.((((.......................)))).))))..(((....)))............(((((((............)))))))....... (-16.30 = -17.14 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:41 2011