| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,631,960 – 8,632,051 |
| Length | 91 |
| Max. P | 0.600608 |
| Location | 8,631,960 – 8,632,051 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 70.97 |
| Shannon entropy | 0.53138 |
| G+C content | 0.49829 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -15.91 |
| Energy contribution | -16.24 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8631960 91 + 21146708 ----CUCGGCGUGUUGCAAGCCGUAUGCUAAUUGAA-ACCUGUGCUUAGCUGGGGUUUCGAACCU----CUCCGGCUGCCUUGGUAGCCAAAAGUUUUUG--------- ----...((((((..(....)..))))))..(((((-((((..((...))..)))))))))....----....((((((....))))))...........--------- ( -28.80, z-score = -1.27, R) >droSim1.chr2R 7112757 91 + 19596830 ----CUCGGCGUGUUGCAAGCCGCAUGCUAAUUGAA-ACCUCUGCUUAGCUGGGGUUUUGAACCU----CACCGGCUGCCUUGGUAGCCAAAAGUUUUUG--------- ----...(((((((.(....).)))))))..(..((-(((((.((...)).)))))))..)....----....((((((....))))))...........--------- ( -32.40, z-score = -2.04, R) >droSec1.super_1 6170016 91 + 14215200 ----CUCGGCGUGUUGCAAGCCGCAUGCUAAUUGAA-ACCUGUGCUUAGCUGGGGUUUUGAACCU----CUCCGGCUGCCUUGGUAGCCAAAAGUUUUUG--------- ----...(((((((.(....).)))))))..(..((-((((..((...))..))))))..)....----....((((((....))))))...........--------- ( -29.80, z-score = -1.20, R) >droYak2.chr2R 12821092 91 - 21139217 ----CUCGGCGUGUUGCAAGCCGCAUGCUAAUUGAA-ACCUGUGCGGAGCCGGGGUUUUGAACUU----UUCUGGCUGCCUUGGUAGCCAAAAGUUUUUG--------- ----(((((((.....)...((((((..........-....)))))).)))))).....((((((----(..(((((((....))))))))))))))...--------- ( -33.64, z-score = -1.96, R) >droEre2.scaffold_4845 5412521 91 - 22589142 ----CUCGGCGUGUUGCAAGCCGCAUGCUAAUUGAA-ACCUGUGCGGAGCUGGGGCUUUCAACUU----UUCUGGCUGCCUUGGUAGCCAAAAGUUUUUG--------- ----(((((((.....)...((((((..........-....)))))).))))))......(((((----(..(((((((....)))))))))))))....--------- ( -30.24, z-score = -0.75, R) >droAna3.scaffold_13266 11374976 105 - 19884421 CACACUCGGCGUGUUGCAAGCCGCAUGCUAAUUGAA-ACCUGUAC--GGCUGGAGUUUCGAUUUUGAACUUUCUGCGGCGGCGGCAGUCAAA-GUUUGUGUCGUCUUUG ((((..((((.((((((..((((((....(((((((-((((....--....)).)))))))))..((....)))))))).)))))))))...-)..))))......... ( -29.60, z-score = 0.54, R) >droVir3.scaffold_10324 885568 92 - 1288806 -----UCUGCCAGUCG---GUCACUUCCAACUGGAAGACUUUUACCUUUCGUUUUUUUUUUUUUUGGGUUCGUGUGUUGUUCGGCUAAUUGAAACUUAUG--------- -----.....((((..---(((.(((((....)))))((....((((..................))))....)).......)))..)))).........--------- ( -16.97, z-score = -0.33, R) >consensus ____CUCGGCGUGUUGCAAGCCGCAUGCUAAUUGAA_ACCUGUGCUUAGCUGGGGUUUUGAACUU____UUCCGGCUGCCUUGGUAGCCAAAAGUUUUUG_________ .......(((((((.(....).)))))))..(((((..((.((.....)).))...)))))............((((((....)))))).................... (-15.91 = -16.24 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:37 2011