| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,628,712 – 8,628,804 |
| Length | 92 |
| Max. P | 0.852638 |
| Location | 8,628,712 – 8,628,804 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.30 |
| Shannon entropy | 0.40396 |
| G+C content | 0.34847 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -11.88 |
| Energy contribution | -11.16 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8628712 92 + 21146708 AAAUAUUUGUGUUUG-----UUGUACGAAAUUCUGGCAAACAA-CAGACGGA--GAAGGCAGAUGAC-UAAACGGAAGUCUUGUUUAUUUGUUUGCCUUUA .......(.((((((-----((((.((......))....))))-)))))).)--(((((((((..(.-(((((((.....))))))).)..))))))))). ( -27.90, z-score = -3.61, R) >droSim1.chr2R 7109548 89 + 19596830 AAAUAUUUGUGUUUG-----UUGUACGAAAUGCUGGCAAACA----GACGGA--GAAGGCAGAUGAC-UAAACGGAAGUCUUGUUUAUUUGUUUGCCUUUA .......(.((((((-----((...((......))...))))----)))).)--(((((((((..(.-(((((((.....))))))).)..))))))))). ( -26.00, z-score = -3.18, R) >droSec1.super_1 6166808 89 + 14215200 AAAUAUUUGUGUUUG-----UUGUACGAAAUGCUGGCAAACA----GACGGA--GAAGGCAGAUGAC-UAAACGGAAGUCUUGUUUAUUUGUUUGCCUUUA .......(.((((((-----((...((......))...))))----)))).)--(((((((((..(.-(((((((.....))))))).)..))))))))). ( -26.00, z-score = -3.18, R) >droYak2.chr2R 12817854 93 - 21139217 AAAUAUUUGUGUUUG-----UUGUACGAAAUGCUGGCAAACAGACGGUCGGA--AAAGGCAGAUGAC-UAAACGGAAGUUUUGUUUAUUUGUUUGCCUUUA .......(.((((((-----(((((.....))).)))))))).)........--(((((((((..(.-((((((((...)))))))).)..))))))))). ( -25.60, z-score = -2.51, R) >droEre2.scaffold_4845 5409326 89 - 22589142 AAAUAUUUGUGUUUG-----UUGUACGAACUGCUGGCAAACA----GACGGA--AAAGGCAGAUGAC-UAAACGGAAGUUUUGUUUAUUUGUUUGCCUUUA .......(.((((((-----((...((......))...))))----)))).)--(((((((((..(.-((((((((...)))))))).)..))))))))). ( -25.80, z-score = -3.18, R) >dp4.chr3 8690987 101 - 19779522 AAAUAUUUAUAUUUGAAGUUUUGUAUGAAAUGUUGCCAAAACAGAUGACGAAAUGUAAACGAAUGGCAUUUCUGUUUGUCUCCGCUUGUUGUUUGUCUUUA .(((((((((((..........))))).))))))......(((((..((((.......((((((((.....))))))))......))))..)))))..... ( -15.12, z-score = 0.27, R) >droPer1.super_4 755277 101 - 7162766 AAAUAUUUAUAUUUGAAGUUUUGUAUGAAAUGUUGCCAAAACAGAUGACGAAAUGUAAACGAAUGGCAUUUCUGUUUGUCUCCGCUUGUUGUUUGUCUUUA .(((((((((((..........))))).))))))......(((((..((((.......((((((((.....))))))))......))))..)))))..... ( -15.12, z-score = 0.27, R) >consensus AAAUAUUUGUGUUUG_____UUGUACGAAAUGCUGGCAAACA____GACGGA__GAAGGCAGAUGAC_UAAACGGAAGUCUUGUUUAUUUGUUUGCCUUUA .....(((((((..........))))))).........................(((((((((..(...((((((.....))))))..)..))))))))). (-11.88 = -11.16 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:36 2011