Locus 388

Sequence ID dm3.chr2L
Location 2,672,411 – 2,672,510
Length 99
Max. P 0.582735
window529

overview

Window 9

Location 2,672,411 – 2,672,510
Length 99
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 87.54
Shannon entropy 0.17317
G+C content 0.45663
Mean single sequence MFE -26.43
Consensus MFE -23.22
Energy contribution -23.33
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.29
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.18
SVM RNA-class probability 0.582735
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 2672411 99 + 23011544
GCAAAGUUUUAUCUUCGUUUUUCUUAAGCGCAUUUUACAAGUCCAAAAGGAUGAGAAAGGAUGCGAAUGUGGAUGUGGAUGCGGAGGCGAAGGCGAAGG--------
......((((..((((((((((((....((((((((....((((....)))).....)))))))).....)))(((....))))))))))))..)))).-------- ( -25.80, z-score =  -1.13, R)
>droSim1.chr2L 2631409 107 + 22036055
GCAAAGUUUUAUCUUCGUUUUUCUUAAGCGCAUUUUACAAGUCCAAAAGGAUGAGGAAGGAUGCGGAUGUGGAUGUGGAUGCGGAGGCGAAGGGCGAGGGGCGAAGG
............(((((((((((.....((((((((.(..((((....))))...).))))))))....................(.(....).)))))))))))). ( -29.60, z-score =  -1.44, R)
>droSec1.super_5 839807 93 + 5866729
GCAAAGUUUUAUCUUCGUUUUUCUUAAGCGCAUUUUACAAGUCCAAAAGGAUGAGGAAGGAUGCGGAUUUAGAUGUGGAUGCGGAGGCGAAGG--------------
............((((((((((((.((.((((((((.(..((((....))))...).))))))))..)).)))(((....)))))))))))).-------------- ( -23.90, z-score =  -1.31, R)
>consensus
GCAAAGUUUUAUCUUCGUUUUUCUUAAGCGCAUUUUACAAGUCCAAAAGGAUGAGGAAGGAUGCGGAUGUGGAUGUGGAUGCGGAGGCGAAGG___AGG________
...........(((((((((((((....((((((((.(..((((....))))...).)))))))).....)))(((....))))))))))))).............. (-23.22 = -23.33 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:00 2011