| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,615,715 – 8,615,807 |
| Length | 92 |
| Max. P | 0.722070 |
| Location | 8,615,715 – 8,615,807 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 55.47 |
| Shannon entropy | 0.90563 |
| G+C content | 0.51993 |
| Mean single sequence MFE | -32.28 |
| Consensus MFE | -10.06 |
| Energy contribution | -8.72 |
| Covariance contribution | -1.34 |
| Combinations/Pair | 2.11 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.722070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8615715 92 + 21146708 ---GGCCAGGCAUUCGUUAUAGAUGUGCCCGUUUUGGCCAGAAAGGGGCACUGGGGCGACAGGUG------GCCU-CGGGUAGAGGUGCGUUAUCUGGGCAA ---.(((......(((((......((((((.((((.....)))).))))))...)))))((((((------((((-(.....)))))....))))))))).. ( -36.50, z-score = -1.37, R) >droSim1.chr2R 7096654 96 + 19596830 GCAGGCCAGGCAUUCGUUAUAGAUGUGCCCGUUUUGGCCAAAAAGGGGCACUGGGGCGACAGGUG------GCCCCCGGGUCGCGGUGCGUUAUCUGGUCAA ...(((((((....(((....(((((((((.((((.....)))).)))))).(((((.(....).------)))))...))).....)))...))))))).. ( -41.10, z-score = -1.13, R) >droSec1.super_1 6153867 96 + 14215200 GCAGGCCAGGCCUUCGUUAUACAUGUGCCCGUUUUGGGCAAAAAGGGGCACUGGGGCGACAGGUG------GCCCCCGGGUGGAGGUGCGUUAUCUGGCCAA ...(((((((((((((((...((.((((((.((((.....)))).)))))))).))))).)))).------((((((....)).)).)).....)))))).. ( -45.50, z-score = -1.60, R) >droYak2.chr2R 12803910 90 - 21139217 ---GGCCAGGCAUUCGUUAUAGAUGUGCCCGUUUUGGCCAUAA-GGGGCACUGGGGCGACAGGUG------GCC--CGGGUCGAGGUGCGUUAUCUGGCCAA ---((((((((((((......)).)))))((..((((((....-(((.((((..(....).))))------.))--).))))))..)).......))))).. ( -41.10, z-score = -2.07, R) >droEre2.scaffold_4845 5396056 90 - 22589142 ---GGCCAGGCAUUCGUUAUAGAUGUGCCCGUUUUGGCCAUAA-GGGGCACUGGGGCGACAGGUG------GCC--CGGGUCGAGGUGCGUUAUCUGGCCAA ---((((((((((((......)).)))))((..((((((....-(((.((((..(....).))))------.))--).))))))..)).......))))).. ( -41.10, z-score = -2.07, R) >droWil1.scaffold_180700 6098202 86 - 6630534 ----------UGUUUGGUUGAUAAAUAGAAUUUAUAUCUACAA-AAUGUUUAUGGCCGGGUCACAAGU---GCGUUGCGCCGUCGUUGUGUUAUCUCUAG-- ----------.....((((.(((((((................-..)))))))))))(((.(((((..---(((......)))..)))))....)))...-- ( -14.37, z-score = 0.97, R) >droMoj3.scaffold_6496 24622847 102 - 26866924 AUCAGGUGGACAUAUUAUAUACAUGUACAUACUCUAUAUAUAUGUGUAUAUCGUUUUAUGUUAUAUGUCGUGCACAAUAGCGCGAGUGCGUUAUCUAUUUCG ...(((((((((((.((((((((((((.(((...))).))))))))))))......)))))).....((((((......))))))......)))))...... ( -24.70, z-score = -0.57, R) >droGri2.scaffold_15245 15198345 97 + 18325388 GGCAGGUGGACAGCACACACAAACACACACA-UAUACAAAUACAUAUAUAAAAGGCGAAUUUAUACA----ACAAUAGACUGUGAGCGCGUUAUCUAUUUGA ..((((((((..((.(.((((.........(-((((........)))))..........(((((...----...))))).)))).).))....)))))))). ( -13.90, z-score = -0.81, R) >consensus ___GGCCAGGCAUUCGUUAUAGAUGUGCCCGUUUUGGCCAUAAAGGGGCACUGGGGCGACAGGUG______GCCC_CGGGUGGAGGUGCGUUAUCUGGCCAA ...(((((((...(((((.....(((.((...............)).)))....)))))............((......))............))))))).. (-10.06 = -8.72 + -1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:31 2011