Locus 3875

Sequence ID dm3.chr2R
Location 8,609,196 – 8,609,296
Length 100
Max. P 0.909477
window5315

overview

Window 5

Location 8,609,196 – 8,609,296
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 79.00
Shannon entropy 0.34517
G+C content 0.33485
Mean single sequence MFE -21.32
Consensus MFE -14.02
Energy contribution -17.02
Covariance contribution 3.00
Combinations/Pair 1.11
Mean z-score -2.05
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.21
SVM RNA-class probability 0.909477
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 8609196 100 + 21146708
UUAAGUAUUUGCACAUCCAGAUUUGGAAUAUCUACAGUCAUUCAAAACGUGUUAGGUUGAAUACGAAUUAGGAAAACUUUGUAGGAAUGCAAGUACACAC
....(((((((((..(((......)))...(((((((...(((....((((((......))))))......)))....)))))))..))))))))).... ( -25.30, z-score =  -3.14, R)
>droSim1.chr2R 7089863 100 + 19596830
UUAAGUAUUUGCACAUCCAGAUUUGGAAUAUCUACAGUCGUUCAAAACGUGUUAGCUUGAAUACGAAUUAAGAAAACUUUGUAGGAAUGCAAGUACAAGU
....(((((((((..(((......)))...(((((((...(((....((((((......))))))......)))....)))))))..))))))))).... ( -25.30, z-score =  -3.07, R)
>droSec1.super_1 6147424 100 + 14215200
UUAAGUAUUUGCACAUCCAGAUUUGGAAUAUCUAUAGACGUUCUAAACGUGUUAGCUUGAAUACGAAUUAAGAAAGCUUUGUAUGAAUGCAAGUUCACAU
....(.((((((((((.(((((((((((..((....))..)))))))((((((......))))))............)))).)))..))))))).).... ( -21.30, z-score =  -1.57, R)
>droYak2.chr2R 12797115 83 - 21139217
-UUAGCAUUUGCAAACCCAGCUUUGGAAUUUCUACAGUCGUU----------------GAAUACAAAUGAAAAGAACAUUGUAGCAAAGCAAGUACAGAU
-...(.((((((....((......))..((((((((((.(((----------------................)))))))))).))))))))).).... ( -13.39, z-score =  -0.40, R)
>consensus
UUAAGUAUUUGCACAUCCAGAUUUGGAAUAUCUACAGUCGUUCAAAACGUGUUAGCUUGAAUACGAAUUAAGAAAACUUUGUAGGAAUGCAAGUACACAU
....((((((((...(((......)))...((((((((..(((....((((((......))))))......)))...))))))))...)))))))).... (-14.02 = -17.02 +   3.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:31 2011