| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,588,435 – 8,588,542 |
| Length | 107 |
| Max. P | 0.754434 |
| Location | 8,588,435 – 8,588,542 |
|---|---|
| Length | 107 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.47 |
| Shannon entropy | 0.46248 |
| G+C content | 0.52109 |
| Mean single sequence MFE | -38.14 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8588435 107 - 21146708 GACUUCAGAUGGAGCCGAUGUCGUGGGCGAAUGUCGAUGGCAUGUCCAUUUUCAGAAAUUAAG----CCCUGUAAGCGGCUUUCAUGGGACUUUGCCCACGACACUCGCCC- ..((((....)))).((((((((((((((((.((((((((.....))))).(((......(((----(((.....).)))))...))))))))))))))))))).)))...- ( -40.30, z-score = -2.75, R) >droSim1.chr2R 7076133 108 - 19596830 GACUUCAGAUGGAGGCGAUGUCGUGGGCGAAUGUCGAUGCCAUGUCCAUUUUCAGAAAUUAAG----CCCUGUAAGCGGCUUUCAUGGGACUUUGCCCACGACACUCGCCCC ..........((.((((((((((((((((((.(((....(((((................(((----(((.....).))))).))))))))))))))))))))).))))))) ( -46.43, z-score = -4.49, R) >droSec1.super_1 6134490 107 - 14215200 GACUUCAGAUGGAGGCGAUGUCGUGGGCGAGUGUCGAUGGCAUGUCCAUUUUCAGAAAUUAAG----CCCUGUAAGCGGCUUUCAUGGGACUUUGCCCACGACACUCGCCC- ..((((....))))(((....)))((((((((((((..((((.((((.............(((----(((.....).))))).....))))..))))..))))))))))))- ( -46.07, z-score = -3.91, R) >droYak2.chr2R 12783887 107 + 21139217 GACUUCAGAUGGCGGCGAUGUCGUGGGCGAAUGUCGAUGGCAUGUCCAUUUUCAGAAAUUAAG----CCCUAUAAGCGGCUUUCAUGGGACUUUGCCCACGACUCUCGCCC- ..........(((((.((.((((((((((((.((((((((.....))))).(((......(((----(((.....).)))))...))))))))))))))))))))))))).- ( -43.80, z-score = -3.60, R) >droEre2.scaffold_4845 5376724 107 + 22589142 GACUUCAGAUGGAGGCGAUGUCGUGGGCGAAUGUCGAUGGCAUGUCCAUUUUCAGAAAUUAAG----CCCUAUAAGCGGCUUUCAUGGGACUUUGCCCACGACUCUCGCCC- .............(((((.((((((((((((.((((((((.....))))).(((......(((----(((.....).)))))...))))))))))))))))))..))))).- ( -43.40, z-score = -3.63, R) >droAna3.scaffold_13266 11338756 96 + 19884421 --------GACUUCUCUAUGUUGUGGGCGAAUUUCGAUGGCUUGUCCAGUUUCUGAAACUAAG-----CCGGUAAGCGGCUUUCAUGCAACUGUGCCUUUGACUUGGCC--- --------(((........)))...(((.((..((((.(((.....(((((.(((((....((-----(((.....))))))))).).))))).))).)))).)).)))--- ( -24.70, z-score = -0.18, R) >droPer1.super_4 726542 89 + 7162766 -----------GAGGUGGAGUCGUGGGCGG-----------AUGUCCAUUUCGAGAAAUUAAGCCCUCCCUAUAAGCGGAUUUCAUGCGACUUUGGCUUUGACUCUUCCUC- -----------((((.(((((((.((((((-----------....)).....((....))..)))).).....((((.((..((....))..)).)))).)))))).))))- ( -30.20, z-score = -1.71, R) >dp4.chr3 8662386 89 + 19779522 -----------GAGGUGGAGUCGUGGGCGG-----------AUGUCCAUUUCGAGAAAUUAAGCCCUCCCUAUAAGCGGAUUUCAUGCGACUUUGGCUUUGACUCUUCCUC- -----------((((.(((((((.((((((-----------....)).....((....))..)))).).....((((.((..((....))..)).)))).)))))).))))- ( -30.20, z-score = -1.71, R) >consensus GACUUCAGAUGGAGGCGAUGUCGUGGGCGAAUGUCGAUGGCAUGUCCAUUUUCAGAAAUUAAG____CCCUAUAAGCGGCUUUCAUGGGACUUUGCCCACGACUCUCGCCC_ .............((.(((((((.(((((((.........((((.((.(((..((..............))..))).))....))))....))))))).))))).)).)).. (-11.53 = -11.62 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:29 2011