| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,668,029 – 2,668,108 |
| Length | 79 |
| Max. P | 0.915945 |
| Location | 2,668,029 – 2,668,108 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 71.24 |
| Shannon entropy | 0.55670 |
| G+C content | 0.45751 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -9.74 |
| Energy contribution | -11.17 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2668029 79 - 23011544 AUAACCGCUCUUCUGUUUGCAGAGCCGAACCAAUCCUUUGUCGUCCUUGCAAAUGAAAUAUUUACGUGUGCGGAGAAAC ....((((..(((.((((((((.(.(((..(((....)))))).).)))))))))))((((....))))))))...... ( -17.30, z-score = -1.36, R) >droSim1.chr2L 2625709 79 - 22036055 AUAACCGCUUUUCUGUUUGCAGGGGCGAACCAAUCCUUUGUCGUCCUUGCAAAUGAAAUAUUUACGUGUGCGGAGAAAC ....((((.((((.((((((((((((((..(((....)))))))))))))))))))))...........))))...... ( -28.30, z-score = -4.11, R) >droSec1.super_5 834460 79 - 5866729 AUAACCGCUUUUCUGUUUGCAGGGGCGAACCAAUCCUUUGUCGUCCUUGCAAAUGAAAUAUUUACGUGUGCGGAGAAAC ....((((.((((.((((((((((((((..(((....)))))))))))))))))))))...........))))...... ( -28.30, z-score = -4.11, R) >droYak2.chr2L 2657552 78 - 22324452 -AACCCCCUGUUCUGUUUGCAAAGGCCAACGAAUCCUUUGUCGUCUUGGCCACUGAAAUAUUUACGUGUGCGGAGAAAC -..((((.(((..(((((.((..(((((((((........))))..)))))..)))))))...))).).).))...... ( -16.40, z-score = -0.41, R) >droEre2.scaffold_4929 2716723 77 - 26641161 -AAACCCCU-UUGUGUUUGCAGAGGCGAACCAAUCCUUUGUCGUCCUGGCAAAUGAAAUAUUUACAUGUGCGGAGAAAC -......((-((((((((((((.(((((..(((....)))))))))).))))))...((((....)))))))))).... ( -16.50, z-score = -0.58, R) >droPer1.super_10 997471 64 - 3432795 ---------GCCCUCUUGUCCGGGCUGAUUAAAACCUUUACUG--CAGAACAGAGGAGCAAACGGGAGUCCAAUA---- ---------(((((((.((.(..((.................)--).).))))))).))....((....))....---- ( -12.73, z-score = 0.76, R) >consensus _UAACCGCUGUUCUGUUUGCAGAGGCGAACCAAUCCUUUGUCGUCCUGGCAAAUGAAAUAUUUACGUGUGCGGAGAAAC ..........(((.((((((((((((((..(((....))))))))))))))))))))...................... ( -9.74 = -11.17 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:59 2011